Click here to switch to the map view.

The map label for this gene is yiaD [H]

Identifier: 85375533

GI number: 85375533

Start: 2726064

End: 2726759

Strand: Reverse

Name: yiaD [H]

Synonym: ELI_13530

Alternate gene names: 85375533

Gene position: 2726759-2726064 (Counterclockwise)

Preceding gene: 85375535

Following gene: 85375531

Centisome position: 89.33

GC content: 62.07

Gene sequence:

>696_bases
ATGACTAAATCACGCGTTCTCGTATCTTCGCTGGCTGCCGTATCGCTGTTCAGCGTTTCGGCCTGCGTTACCGACCCGAA
CACCGGTGAGCAGAAAGTTTCGCGCACCGGCATCGGAGCTGCCGTAGGCGGTACGCTCGGCTACCTGCTCGGCGGCGTTG
TCGGCGGCGATGCCGCACGGATTATCGGCGCGGGCATCGGCGGTACGGCCGGAGCCGTGATCGGCGACCAGTTCGACGAC
CAGATCCGCGAGCTCGACGAACAGACCGCCGGGAGCGGCGTCGATGTCGAGGAAGTTGGCGACCAGGATGCGATCCTCGT
CCGCCTTCCGGACGGTGTCACCTTCGCCAGCGGATCGGCACGGATCAATTCGGCATTCTATCCTACGCTCAACGAGATCG
CCGAATCGCTCAAGCGTTATCCCAACAGCCTGATAGATGTGTACGGTTTCACCGACACGACCGGTTCCGATGCGCTCAAC
CAGCAATTGTCGGAAAGCCGCGCCCAAACCGTGGCCGACTATCTTGTCGCACGCGGCGTTGCGCGTTCGCGGATCGCAAC
CCAGGGTTACGGCGAACGCCGCGAATATCTGCGGATCCAGACTGCAGACAATGTCAACGAGCCGCTCAACCGTCGCGTCG
AGATCAAGATTACGCCGATCAGCCAAGACGATGTGGCTCGCGCCCGCGCCCAGTAA

Upstream 100 bases:

>100_bases
CGCCGGAAGGGTTTGCGAGTTGGTAGAGCATGAGATGCTGGTGGGGCGTCGCAAATCCCCTGCGCGGGGGTAGCCGCGCG
ATACAAGAGGGACATTGGAA

Downstream 100 bases:

>100_bases
TCGAAGGGCCAAGCGACATCGCATAGCTCTGCCCCCGCGGCAGAACGGGAAGGGTCGGCAGCAATGCCGGCCCTTTCGCT
ATTTCAGCTTGTCGGCGAAT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTKSRVLVSSLAAVSLFSVSACVTDPNTGEQKVSRTGIGAAVGGTLGYLLGGVVGGDAARIIGAGIGGTAGAVIGDQFDD
QIRELDEQTAGSGVDVEEVGDQDAILVRLPDGVTFASGSARINSAFYPTLNEIAESLKRYPNSLIDVYGFTDTTGSDALN
QQLSESRAQTVADYLVARGVARSRIATQGYGERREYLRIQTADNVNEPLNRRVEIKITPISQDDVARARAQ

Sequences:

>Translated_231_residues
MTKSRVLVSSLAAVSLFSVSACVTDPNTGEQKVSRTGIGAAVGGTLGYLLGGVVGGDAARIIGAGIGGTAGAVIGDQFDD
QIRELDEQTAGSGVDVEEVGDQDAILVRLPDGVTFASGSARINSAFYPTLNEIAESLKRYPNSLIDVYGFTDTTGSDALN
QQLSESRAQTVADYLVARGVARSRIATQGYGERREYLRIQTADNVNEPLNRRVEIKITPISQDDVARARAQ
>Mature_230_residues
TKSRVLVSSLAAVSLFSVSACVTDPNTGEQKVSRTGIGAAVGGTLGYLLGGVVGGDAARIIGAGIGGTAGAVIGDQFDDQ
IRELDEQTAGSGVDVEEVGDQDAILVRLPDGVTFASGSARINSAFYPTLNEIAESLKRYPNSLIDVYGFTDTTGSDALNQ
QLSESRAQTVADYLVARGVARSRIATQGYGERREYLRIQTADNVNEPLNRRVEIKITPISQDDVARARAQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=222, Percent_Identity=37.8378378378378, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787191, Length=92, Percent_Identity=41.304347826087, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 24312; Mature: 24181

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSRVLVSSLAAVSLFSVSACVTDPNTGEQKVSRTGIGAAVGGTLGYLLGGVVGGDAAR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
IIGAGIGGTAGAVIGDQFDDQIRELDEQTAGSGVDVEEVGDQDAILVRLPDGVTFASGSA
HEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCCCCEECCCCC
RINSAFYPTLNEIAESLKRYPNSLIDVYGFTDTTGSDALNQQLSESRAQTVADYLVARGV
EECCCCCCCHHHHHHHHHHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARSRIATQGYGERREYLRIQTADNVNEPLNRRVEIKITPISQDDVARARAQ
HHHHHHHCCCCCHHHEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHCCC
>Mature Secondary Structure 
TKSRVLVSSLAAVSLFSVSACVTDPNTGEQKVSRTGIGAAVGGTLGYLLGGVVGGDAAR
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
IIGAGIGGTAGAVIGDQFDDQIRELDEQTAGSGVDVEEVGDQDAILVRLPDGVTFASGSA
HEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCCCCEECCCCC
RINSAFYPTLNEIAESLKRYPNSLIDVYGFTDTTGSDALNQQLSESRAQTVADYLVARGV
EECCCCCCCHHHHHHHHHHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARSRIATQGYGERREYLRIQTADNVNEPLNRRVEIKITPISQDDVARARAQ
HHHHHHHCCCCCHHHEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]