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The map label for this gene is yebA [H]

Identifier: 85375293

GI number: 85375293

Start: 2490824

End: 2491525

Strand: Reverse

Name: yebA [H]

Synonym: ELI_12330

Alternate gene names: 85375293

Gene position: 2491525-2490824 (Counterclockwise)

Preceding gene: 85375294

Following gene: 85375292

Centisome position: 81.63

GC content: 64.39

Gene sequence:

>702_bases
GTGATTTCATTTCTCAAGGCTACGGCCAAGACCGGTGCACTTATTGCAGCATCGCTGACCGTAGGGATCGTATCGCCAGC
AAGTGCCAACACCAGCGCTTCTGCCGCGTCTGTCGAAGTGACCAAGCCGGTCAAGGAATCGGCGTCGCCGCTGGGCAAGG
GCGACGACCAGTTCCGCGAGCTGTTCGCGCAGTGGGAAGGGCTCGACAAGGGCACCGGCTCCAGCACCACGAAGACGCGC
AGCAGCGGGGTCTCCATTCCCTCTCGCATGCCGCTCGAAGGCGCGAGCCTGACGAGCGGTTACGGCATGCGTACTCACCC
GGTCCTGGGTGGCCGCCGCAGCCACAAGGGCGTCGACCTCGCCGCGCCGACCGGTACGCCGGTCTATGCCACGGGCGACG
GGCTCGTCGAAATGGCGCAATGGTTCTCGAGCTACGGCAAGTACATCCAGATCGGTCACGGCAACGATCTCGAAACGCGC
TTCGCGCATCTTTCGCGCATCGTCGTCGACAAGGGCGAATTCGTGCAGAAGGGCGATCTGATCGGTTATGTCGGCTCGAC
CGGACGCTCGACCGGGCCGCACCTGCATTACGAAGTCCGCGTGGGCGGGGTTGCGGTCAATCCGATCCCCTATATGGTCG
AGAGCGACACGCAGATCGCCTTCGCCGAAGCGACCGGTCGCGGCGCAGTCGGCGGCGACTGA

Upstream 100 bases:

>100_bases
TTGGCTCGATAACACGAACCCACCAAGCGGGCATTGGTTCCCGCGTCACAAAAAACAGGGTCTGCGGCGTCGGGACGCGC
CGTATCCGAAGGACGGGTTC

Downstream 100 bases:

>100_bases
CATATCGAGTTTCCGCTATAAAGCGGCTTGGACATCAGGAGAGGGTGTCCTTCAATGGGCGGCGGGTCATCCCGCCGCCT
TTTTTGTGTTCGCAGGCGCA

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MISFLKATAKTGALIAASLTVGIVSPASANTSASAASVEVTKPVKESASPLGKGDDQFRELFAQWEGLDKGTGSSTTKTR
SSGVSIPSRMPLEGASLTSGYGMRTHPVLGGRRSHKGVDLAAPTGTPVYATGDGLVEMAQWFSSYGKYIQIGHGNDLETR
FAHLSRIVVDKGEFVQKGDLIGYVGSTGRSTGPHLHYEVRVGGVAVNPIPYMVESDTQIAFAEATGRGAVGGD

Sequences:

>Translated_233_residues
MISFLKATAKTGALIAASLTVGIVSPASANTSASAASVEVTKPVKESASPLGKGDDQFRELFAQWEGLDKGTGSSTTKTR
SSGVSIPSRMPLEGASLTSGYGMRTHPVLGGRRSHKGVDLAAPTGTPVYATGDGLVEMAQWFSSYGKYIQIGHGNDLETR
FAHLSRIVVDKGEFVQKGDLIGYVGSTGRSTGPHLHYEVRVGGVAVNPIPYMVESDTQIAFAEATGRGAVGGD
>Mature_233_residues
MISFLKATAKTGALIAASLTVGIVSPASANTSASAASVEVTKPVKESASPLGKGDDQFRELFAQWEGLDKGTGSSTTKTR
SSGVSIPSRMPLEGASLTSGYGMRTHPVLGGRRSHKGVDLAAPTGTPVYATGDGLVEMAQWFSSYGKYIQIGHGNDLETR
FAHLSRIVVDKGEFVQKGDLIGYVGSTGRSTGPHLHYEVRVGGVAVNPIPYMVESDTQIAFAEATGRGAVGGD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=106, Percent_Identity=50.9433962264151, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI87082174, Length=99, Percent_Identity=36.3636363636364, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=37.3737373737374, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082297, Length=104, Percent_Identity=35.5769230769231, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 24203; Mature: 24203

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFLKATAKTGALIAASLTVGIVSPASANTSASAASVEVTKPVKESASPLGKGDDQFRE
CCCHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEECCCHHHHCCCCCCCHHHHHH
LFAQWEGLDKGTGSSTTKTRSSGVSIPSRMPLEGASLTSGYGMRTHPVLGGRRSHKGVDL
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
AAPTGTPVYATGDGLVEMAQWFSSYGKYIQIGHGNDLETRFAHLSRIVVDKGEFVQKGDL
ECCCCCCEEECCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEECCCE
IGYVGSTGRSTGPHLHYEVRVGGVAVNPIPYMVESDTQIAFAEATGRGAVGGD
EEEECCCCCCCCCEEEEEEEECCEEECCCCEEEECCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MISFLKATAKTGALIAASLTVGIVSPASANTSASAASVEVTKPVKESASPLGKGDDQFRE
CCCHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEECCCHHHHCCCCCCCHHHHHH
LFAQWEGLDKGTGSSTTKTRSSGVSIPSRMPLEGASLTSGYGMRTHPVLGGRRSHKGVDL
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
AAPTGTPVYATGDGLVEMAQWFSSYGKYIQIGHGNDLETRFAHLSRIVVDKGEFVQKGDL
ECCCCCCEEECCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEECCCE
IGYVGSTGRSTGPHLHYEVRVGGVAVNPIPYMVESDTQIAFAEATGRGAVGGD
EEEECCCCCCCCCEEEEEEEECCEEECCCCEEEECCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]