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The map label for this gene is yciR [C]

Identifier: 85375075

GI number: 85375075

Start: 2273022

End: 2274308

Strand: Reverse

Name: yciR [C]

Synonym: ELI_11240

Alternate gene names: 85375075

Gene position: 2274308-2273022 (Counterclockwise)

Preceding gene: 85375076

Following gene: 85375074

Centisome position: 74.51

GC content: 62.55

Gene sequence:

>1287_bases
ATGATCGATGCGCTCACCGGTTTGCCCAATCGGCGCGCTTTGCATCGGGACATTGCTTCTCGCCGCGGTGGCGAAGGCGA
AGTTGCGCTCGCAATCGTGGATCTCGACGGGTTCAAGCAGGTCAACGACCATTTCGGACATGCGACCGGAGACGAACTGA
TCCGGGCCGTCGCGATTCTCATAACGGAGACATGCGGCGACGAGGCGCAGTGCTATCGGCTGAGCGGAGACGAGTTCGTC
TTGCTCGCGGACGGACCGATCGCCGGCAATCTGATCGAAGGCATCAGCCGCATGATCGTCGATCGGCTGCGCAAGCCGGT
GCAGCTCGAACGAAGAGCGATCGCCGTCGGTGCGAGCGTCGGCCTCTCGCGCAGCGGTGGCGAAGAGGCACCCGCCAGTT
CCGAATTGCTGAGGCGCGCAGATGTGGCGATGTTTGCTTCCAAGCGCGGCGGAAAGATGCGCTGCACCTGGTATGCCCAA
GCGCTCGATCGCAATCGCGAAGCCCGGCTGGATCTGGACAACGAGCTGCGCGCAGCGCTCGCCAAGGGGGAATTCCGGGT
CAATTACCAGCCGCTCGTCGATGCCAGAACCGGCGCCATCGTGGCCGTCGAATCCCTGCTCCGCTGGGAACGCGAGGACG
GCAGTCAGATCGGCCCCAATATATTCATTCCGGTGGCCGAGGAATCGGGCCTGATCAACGCGATCGGCCTGTGGGTCCTG
CGCACCGCGTGCCGCGATGCGCGCGATTGGGGTGACCTGAACCTGTCGGTCAATATCTCGGCAGCGCAGTTGCGCAATCC
GGAGTTTCCGATCTTGGTCGGACAGGTTCTCGAGGAAACCGGCTTTCCGCCCGAGCGGCTCGAACTGGAAGTCACCGAGA
CTTGCCTGGTGCTCGACCCGGTGGTGGTCGGGCGGAGCCTCGATGTGATCCGCCAATTCGGGGTCAGCATTTCGCTCGAC
GATTTCGGCACTGGCTATGCTTCGATCGGCTTCCTGCGGCAGTTCCGCTTCGAAAAGCTCAAACTGGACCGCTCGCTCGT
CGTCGACGCGCAGGAGGACGATGGCAGCAGAGCCATGATGATTTCCAGCATCTCGCTCGCCCGAGCAATGAAGATGGGCG
TGACTGCCGAAGGGGTCGAGACCCAGTGCCAGGCCGATATGGTGCGCGCCGCGGGTGCGGACCAGATTCAGGGCTGGCTC
TATTACCGGGCGATGCCGCCCGAACAGATCGTTGCATTGAAGGATAAATTCGGATCGACGCGGTCCGACAGGAGCAAAGT
GGCATGA

Upstream 100 bases:

>100_bases
CTCGTGGCGCTGGCTTCTGGCCGGTGGGGTTGCCGTCTGCCTTGTCGCTTTGGGTGTCGGTCTCGGCCGATGTACTGCTC
TACGCCTCGATCGCGGGGCC

Downstream 100 bases:

>100_bases
GTACGATCGAAGACCTCGCAAGCGATCTCCGGCGGGAAGCCGAGACCGAAATCGCGGCCGCATCGGACATGGTGGCTCCG
CGCATGCGCAACCCAATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MIDALTGLPNRRALHRDIASRRGGEGEVALAIVDLDGFKQVNDHFGHATGDELIRAVAILITETCGDEAQCYRLSGDEFV
LLADGPIAGNLIEGISRMIVDRLRKPVQLERRAIAVGASVGLSRSGGEEAPASSELLRRADVAMFASKRGGKMRCTWYAQ
ALDRNREARLDLDNELRAALAKGEFRVNYQPLVDARTGAIVAVESLLRWEREDGSQIGPNIFIPVAEESGLINAIGLWVL
RTACRDARDWGDLNLSVNISAAQLRNPEFPILVGQVLEETGFPPERLELEVTETCLVLDPVVVGRSLDVIRQFGVSISLD
DFGTGYASIGFLRQFRFEKLKLDRSLVVDAQEDDGSRAMMISSISLARAMKMGVTAEGVETQCQADMVRAAGADQIQGWL
YYRAMPPEQIVALKDKFGSTRSDRSKVA

Sequences:

>Translated_428_residues
MIDALTGLPNRRALHRDIASRRGGEGEVALAIVDLDGFKQVNDHFGHATGDELIRAVAILITETCGDEAQCYRLSGDEFV
LLADGPIAGNLIEGISRMIVDRLRKPVQLERRAIAVGASVGLSRSGGEEAPASSELLRRADVAMFASKRGGKMRCTWYAQ
ALDRNREARLDLDNELRAALAKGEFRVNYQPLVDARTGAIVAVESLLRWEREDGSQIGPNIFIPVAEESGLINAIGLWVL
RTACRDARDWGDLNLSVNISAAQLRNPEFPILVGQVLEETGFPPERLELEVTETCLVLDPVVVGRSLDVIRQFGVSISLD
DFGTGYASIGFLRQFRFEKLKLDRSLVVDAQEDDGSRAMMISSISLARAMKMGVTAEGVETQCQADMVRAAGADQIQGWL
YYRAMPPEQIVALKDKFGSTRSDRSKVA
>Mature_428_residues
MIDALTGLPNRRALHRDIASRRGGEGEVALAIVDLDGFKQVNDHFGHATGDELIRAVAILITETCGDEAQCYRLSGDEFV
LLADGPIAGNLIEGISRMIVDRLRKPVQLERRAIAVGASVGLSRSGGEEAPASSELLRRADVAMFASKRGGKMRCTWYAQ
ALDRNREARLDLDNELRAALAKGEFRVNYQPLVDARTGAIVAVESLLRWEREDGSQIGPNIFIPVAEESGLINAIGLWVL
RTACRDARDWGDLNLSVNISAAQLRNPEFPILVGQVLEETGFPPERLELEVTETCLVLDPVVVGRSLDVIRQFGVSISLD
DFGTGYASIGFLRQFRFEKLKLDRSLVVDAQEDDGSRAMMISSISLARAMKMGVTAEGVETQCQADMVRAAGADQIQGWL
YYRAMPPEQIVALKDKFGSTRSDRSKVA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=413, Percent_Identity=34.3825665859564, Blast_Score=232, Evalue=3e-62,
Organism=Escherichia coli, GI87081921, Length=418, Percent_Identity=28.9473684210526, Blast_Score=195, Evalue=6e-51,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=31.6205533596838, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=33.8912133891213, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI226510982, Length=411, Percent_Identity=27.4939172749392, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1787055, Length=387, Percent_Identity=27.1317829457364, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081845, Length=256, Percent_Identity=32.421875, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1786507, Length=264, Percent_Identity=29.9242424242424, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=31.2757201646091, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788849, Length=252, Percent_Identity=30.5555555555556, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=27.8688524590164, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87082096, Length=419, Percent_Identity=24.582338902148, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788381, Length=431, Percent_Identity=27.3781902552204, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787056, Length=160, Percent_Identity=31.875, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=30.1775147928994, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=30.379746835443, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=155, Percent_Identity=30.9677419354839, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=219, Percent_Identity=22.3744292237443, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=29.559748427673, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46874; Mature: 46874

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDALTGLPNRRALHRDIASRRGGEGEVALAIVDLDGFKQVNDHFGHATGDELIRAVAIL
CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHH
ITETCGDEAQCYRLSGDEFVLLADGPIAGNLIEGISRMIVDRLRKPVQLERRAIAVGASV
HHHCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHEEEECCC
GLSRSGGEEAPASSELLRRADVAMFASKRGGKMRCTWYAQALDRNREARLDLDNELRAAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCCHHHHHHH
AKGEFRVNYQPLVDARTGAIVAVESLLRWEREDGSQIGPNIFIPVAEESGLINAIGLWVL
HCCCEEEECEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHH
RTACRDARDWGDLNLSVNISAAQLRNPEFPILVGQVLEETGFPPERLELEVTETCLVLDP
HHHHHCCCCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHCCCCHHHEEEEEECEEEEECH
VVVGRSLDVIRQFGVSISLDDFGTGYASIGFLRQFRFEKLKLDRSLVVDAQEDDGSRAMM
HHHCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEE
ISSISLARAMKMGVTAEGVETQCQADMVRAAGADQIQGWLYYRAMPPEQIVALKDKFGST
EEHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHCEEEEEECCCHHHHHHHHHHCCCC
RSDRSKVA
CCCCCCCC
>Mature Secondary Structure
MIDALTGLPNRRALHRDIASRRGGEGEVALAIVDLDGFKQVNDHFGHATGDELIRAVAIL
CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHH
ITETCGDEAQCYRLSGDEFVLLADGPIAGNLIEGISRMIVDRLRKPVQLERRAIAVGASV
HHHCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHEEEECCC
GLSRSGGEEAPASSELLRRADVAMFASKRGGKMRCTWYAQALDRNREARLDLDNELRAAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCCHHHHHHH
AKGEFRVNYQPLVDARTGAIVAVESLLRWEREDGSQIGPNIFIPVAEESGLINAIGLWVL
HCCCEEEECEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHH
RTACRDARDWGDLNLSVNISAAQLRNPEFPILVGQVLEETGFPPERLELEVTETCLVLDP
HHHHHCCCCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHCCCCHHHEEEEEECEEEEECH
VVVGRSLDVIRQFGVSISLDDFGTGYASIGFLRQFRFEKLKLDRSLVVDAQEDDGSRAMM
HHHCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEE
ISSISLARAMKMGVTAEGVETQCQADMVRAAGADQIQGWLYYRAMPPEQIVALKDKFGST
EEHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHCEEEEEECCCHHHHHHHHHHCCCC
RSDRSKVA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]