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The map label for this gene is ybeY [C]

Identifier: 85374528

GI number: 85374528

Start: 1741965

End: 1742450

Strand: Direct

Name: ybeY [C]

Synonym: ELI_08505

Alternate gene names: 85374528

Gene position: 1741965-1742450 (Clockwise)

Preceding gene: 85374527

Following gene: 85374529

Centisome position: 57.07

GC content: 60.7

Gene sequence:

>486_bases
GTGAAGCTGGAAATCGAAATCGAACATTGGCCCGATGGCGAATGGGAATCCATCACGGGTGGCGCTGCCAAGGCCACAAG
GGATGTCGAACCCGCCCTCGCCCACGCACGCCTTGAAACTTCGGTTCTGTTCACCTCCGACGAGCAAGTCCACGTGCTCA
ACCGCGAATGGCGCGAGCGCGACAAGCCGACCAATGTCCTTTCTTTTCCGATGCTCGATCGCGACAGATTGCGCGCGCTC
GAGCCTGAGGGACCGCCAGAGATGCTGGGCGACATCGCGCTGGCCTACGAGACTTGTGCTCGCGAGGCAGAGGAGAAGGG
CATCTCGCTTGAGGCCCACGCCACGCATCTGATCGTCCACGGCCTGCTGCACCTTGCCGGGCACGATCATGTCGATTCCG
ACGCACAAGCCGAGGAAATGGAAGCGCTGGAGATTGCAGCGCTTGCAAAACTGGGCATTGCGGACCCATATGGAGACCGC
ACATGA

Upstream 100 bases:

>100_bases
GGCACGATCCGGTTCACGGCCGCCGACGTGGTGCGTCACCCGATCGTAGGGCGCATCGTCGAGGCCTACGAAGGGCCTGT
GGAGTAGTGGCTCGAAGGCT

Downstream 100 bases:

>100_bases
TACTGCATTCGATTCAGGGAGCACGTTGAAGGGCCATGCCCGACAGTGACCAATCCGCCGGAGATGCGGAGAGTAGAAGC
GGTCTGATGACCGCCTTTCG

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MKLEIEIEHWPDGEWESITGGAAKATRDVEPALAHARLETSVLFTSDEQVHVLNREWRERDKPTNVLSFPMLDRDRLRAL
EPEGPPEMLGDIALAYETCAREAEEKGISLEAHATHLIVHGLLHLAGHDHVDSDAQAEEMEALEIAALAKLGIADPYGDR
T

Sequences:

>Translated_161_residues
MKLEIEIEHWPDGEWESITGGAAKATRDVEPALAHARLETSVLFTSDEQVHVLNREWRERDKPTNVLSFPMLDRDRLRAL
EPEGPPEMLGDIALAYETCAREAEEKGISLEAHATHLIVHGLLHLAGHDHVDSDAQAEEMEALEIAALAKLGIADPYGDR
T
>Mature_161_residues
MKLEIEIEHWPDGEWESITGGAAKATRDVEPALAHARLETSVLFTSDEQVHVLNREWRERDKPTNVLSFPMLDRDRLRAL
EPEGPPEMLGDIALAYETCAREAEEKGISLEAHATHLIVHGLLHLAGHDHVDSDAQAEEMEALEIAALAKLGIADPYGDR
T

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=123, Percent_Identity=43.9024390243902, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_ERYLH (Q2N948)

Other databases:

- EMBL:   CP000157
- RefSeq:   YP_458590.1
- ProteinModelPortal:   Q2N948
- SMR:   Q2N948
- STRING:   Q2N948
- GeneID:   3871153
- GenomeReviews:   CP000157_GR
- KEGG:   eli:ELI_08505
- NMPDR:   fig|314225.3.peg.1341
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   LEAHATH
- PhylomeDB:   Q2N948
- ProtClustDB:   CLSK844004
- BioCyc:   ELIT314225:ELI_08505-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17889; Mature: 17889

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEIEIEHWPDGEWESITGGAAKATRDVEPALAHARLETSVLFTSDEQVHVLNREWRER
CEEEEEEEECCCCCCCCCCCCCHHCCCCCCHHHHHHHHHEEEEEECCCEEEEHHHHHHHC
DKPTNVLSFPMLDRDRLRALEPEGPPEMLGDIALAYETCAREAEEKGISLEAHATHLIVH
CCCCCEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHH
GLLHLAGHDHVDSDAQAEEMEALEIAALAKLGIADPYGDRT
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKLEIEIEHWPDGEWESITGGAAKATRDVEPALAHARLETSVLFTSDEQVHVLNREWRER
CEEEEEEEECCCCCCCCCCCCCHHCCCCCCHHHHHHHHHEEEEEECCCEEEEHHHHHHHC
DKPTNVLSFPMLDRDRLRALEPEGPPEMLGDIALAYETCAREAEEKGISLEAHATHLIVH
CCCCCEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHH
GLLHLAGHDHVDSDAQAEEMEALEIAALAKLGIADPYGDRT
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA