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The map label for this gene is yciR [C]

Identifier: 85374422

GI number: 85374422

Start: 1651731

End: 1653695

Strand: Direct

Name: yciR [C]

Synonym: ELI_07975

Alternate gene names: 85374422

Gene position: 1651731-1653695 (Clockwise)

Preceding gene: 85374421

Following gene: 85374423

Centisome position: 54.11

GC content: 63.05

Gene sequence:

>1965_bases
ATGCCGGGCCGTTCCCTTCTGACTGCGATCAAGCGTCGCATGGGTCGAAAAACCGAGCGCGATGCGATCAGCGATCGCGT
GCGCCGCCTGCTTGTACGCACGCTTTATACCCAGCCGTCCAACCTCGCGATCGGTGCGATCATGGGGGCCGTCTGCACAT
CGGTGACGGCTTGGGTCACGCAAAGTACCGTCATCACGATCTGCGTCGTGCTGATGACGCTCATCGGGTTCGCTCGCGTC
CTGATGGGACACATGCTTTCACCCGACAACGAGCGAACGACCACGCGCAAGCTCGAGCTGCTCTACGAGGCGGGGGCATT
CAGCTACGCCTTCCTCTATGGCCTGATCGCCGCGCTGGTGATGATCTACTATCCCGGCAGCAGCGCGGAGTTGCTGATCG
TGGCCTGCGCCCTGAGCTACGGCATTGCCGTTGCGGCGCGCAATGCCGGGTCGCGACTTATTGCCCAGGGCCAGCTGGTG
CTGGCGCTCGGCCCCATCTTCACCGCCTGCCTTATCGTCGGAACGATACCGACGCTGACGCTCGCCGTGTCTATCCTGCT
GGGAGGAAGCGCCACCGCGAGCATCGCCAAGAACCTTCACCGGGTGCTGCGCGCATCGATCGCATCGGCCGAAACCAGCG
AACGCCTCGCCCGCAAGATGGAAATCCAGGCGCATACCGACGTCGTCACGAAACTCGCCAACCGGGCCGGCCTCAACCAC
CAGATGGTCGAGAAACTGATGGCCATTTCGCAGGACCAGATGCTGGCGATGTATTGGCTCGACATCGACCGCTTCAAGGA
GGTCAACGACCTGCTCGGGCACCAGACGGGCGACAAGGTGCTGGTCGAACTCGCGCAGCGGCTGAAGGAAGCCATGCCGC
AAAATGCGCTGGTGGCGCGGTTCGGCGGCGACGAGTTTACCGTCGTCACCGAAGTCGGAAGCCGCCGCCATGCCGAGATG
CTGGCGAGCGAAGTGCATGCCGAACTGATGCGTCCGATGCGCATCGACGGCGACCGGCTCGAAGTCGGCGCTTCGATCGG
GGTCGCGCTCCTTCCCGATGACGGTGTCGACAGCGACGAGCTCATGCAGAAAGCCGACCTCGCCCTCTATCATGCCAAGG
TCAACGGCCGGAAACAGACGCAATTCTACGATGCCTCGATGAGCCGCGACCTCGCCCGCAAACGCGAAATCGAAGCGGAG
CTGCGCGCCGCCATCCTGAAAGACGAACTGTCGATCTTCTTCCAGCCGATCGTCGACCTGAAGACCGGCCGGATCAGGAC
CTTCGAAGCGCTGGTCCGCTGGTTCCACCCGGAAAAGGGCGAATTGCGCCCCGACGAATTCATCCCGGTGGCGGAAGACA
GCGGCCTAATCGTTACGCTCGGCAACTGGATCACCGCGCAGGCCGCCAAGGCTGCGGCGCAATGGCCGGAAGAAGTGACC
CTGGCCGTCAACCTCTCGCCGCTGCAGATCAAGGCGCCGGGTGCGTCCCTGGGGGTGCTCAATGCCCTGCGCGAAGCACA
ATTGCCGCCGGAACGGCTCGAGCTCGAAGTGACCGAGAGCCTGTTCCTCGATGACAGCGAGGCCACCGAACTCTTCATCA
ACGAACTTGCCGCCAAGGGCGTGCGCTTTGCGATGGACGATTTCGGGACCGGCTATTCCTCGCTCGGCTACATCAACAAA
TATCCGTTCTCCAAGATCAAGGTCGACCGCAGCTTCGTCTCCGGCCCCGACGTCAGCAAGAAGACCGAGGCGATCATCCG
CGCCGTCGCCGAAATGGGCGCGCAGCTCGACATGGACATCGTCGCCGAAGGGCTGGAAAAGATCGAGCAGGTCAAGGCCG
TTCGCGAAGCCGGCTGTACGCTGGGCCAAGGCTATTATTTCAGCCGCGCCGTGCCCGATTACCTCGCCGCCATGCTGCTG
GCGCAGGAGCGCGAGAGCGAAGACGGATTGCGCAAGGTCGGCTAA

Upstream 100 bases:

>100_bases
TCGCTCCGGCACGCGCGGCCCAGCATCACAAAATGCGCGGCGCGGTTGGTAAGTATCGCGTTAACCGGATCGTGACCTCT
TCGGCCTAGTGCGGACGTCT

Downstream 100 bases:

>100_bases
GCGACGCCTGCGCAAGGACGTGCGCGGGAACAATCCGGTAGGATATCGATAGAGTAGTTGTAGCGCACGATCGCGCACCC
CGCAGAATCTACCCTTATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 654; Mature: 653

Protein sequence:

>654_residues
MPGRSLLTAIKRRMGRKTERDAISDRVRRLLVRTLYTQPSNLAIGAIMGAVCTSVTAWVTQSTVITICVVLMTLIGFARV
LMGHMLSPDNERTTTRKLELLYEAGAFSYAFLYGLIAALVMIYYPGSSAELLIVACALSYGIAVAARNAGSRLIAQGQLV
LALGPIFTACLIVGTIPTLTLAVSILLGGSATASIAKNLHRVLRASIASAETSERLARKMEIQAHTDVVTKLANRAGLNH
QMVEKLMAISQDQMLAMYWLDIDRFKEVNDLLGHQTGDKVLVELAQRLKEAMPQNALVARFGGDEFTVVTEVGSRRHAEM
LASEVHAELMRPMRIDGDRLEVGASIGVALLPDDGVDSDELMQKADLALYHAKVNGRKQTQFYDASMSRDLARKREIEAE
LRAAILKDELSIFFQPIVDLKTGRIRTFEALVRWFHPEKGELRPDEFIPVAEDSGLIVTLGNWITAQAAKAAAQWPEEVT
LAVNLSPLQIKAPGASLGVLNALREAQLPPERLELEVTESLFLDDSEATELFINELAAKGVRFAMDDFGTGYSSLGYINK
YPFSKIKVDRSFVSGPDVSKKTEAIIRAVAEMGAQLDMDIVAEGLEKIEQVKAVREAGCTLGQGYYFSRAVPDYLAAMLL
AQERESEDGLRKVG

Sequences:

>Translated_654_residues
MPGRSLLTAIKRRMGRKTERDAISDRVRRLLVRTLYTQPSNLAIGAIMGAVCTSVTAWVTQSTVITICVVLMTLIGFARV
LMGHMLSPDNERTTTRKLELLYEAGAFSYAFLYGLIAALVMIYYPGSSAELLIVACALSYGIAVAARNAGSRLIAQGQLV
LALGPIFTACLIVGTIPTLTLAVSILLGGSATASIAKNLHRVLRASIASAETSERLARKMEIQAHTDVVTKLANRAGLNH
QMVEKLMAISQDQMLAMYWLDIDRFKEVNDLLGHQTGDKVLVELAQRLKEAMPQNALVARFGGDEFTVVTEVGSRRHAEM
LASEVHAELMRPMRIDGDRLEVGASIGVALLPDDGVDSDELMQKADLALYHAKVNGRKQTQFYDASMSRDLARKREIEAE
LRAAILKDELSIFFQPIVDLKTGRIRTFEALVRWFHPEKGELRPDEFIPVAEDSGLIVTLGNWITAQAAKAAAQWPEEVT
LAVNLSPLQIKAPGASLGVLNALREAQLPPERLELEVTESLFLDDSEATELFINELAAKGVRFAMDDFGTGYSSLGYINK
YPFSKIKVDRSFVSGPDVSKKTEAIIRAVAEMGAQLDMDIVAEGLEKIEQVKAVREAGCTLGQGYYFSRAVPDYLAAMLL
AQERESEDGLRKVG
>Mature_653_residues
PGRSLLTAIKRRMGRKTERDAISDRVRRLLVRTLYTQPSNLAIGAIMGAVCTSVTAWVTQSTVITICVVLMTLIGFARVL
MGHMLSPDNERTTTRKLELLYEAGAFSYAFLYGLIAALVMIYYPGSSAELLIVACALSYGIAVAARNAGSRLIAQGQLVL
ALGPIFTACLIVGTIPTLTLAVSILLGGSATASIAKNLHRVLRASIASAETSERLARKMEIQAHTDVVTKLANRAGLNHQ
MVEKLMAISQDQMLAMYWLDIDRFKEVNDLLGHQTGDKVLVELAQRLKEAMPQNALVARFGGDEFTVVTEVGSRRHAEML
ASEVHAELMRPMRIDGDRLEVGASIGVALLPDDGVDSDELMQKADLALYHAKVNGRKQTQFYDASMSRDLARKREIEAEL
RAAILKDELSIFFQPIVDLKTGRIRTFEALVRWFHPEKGELRPDEFIPVAEDSGLIVTLGNWITAQAAKAAAQWPEEVTL
AVNLSPLQIKAPGASLGVLNALREAQLPPERLELEVTESLFLDDSEATELFINELAAKGVRFAMDDFGTGYSSLGYINKY
PFSKIKVDRSFVSGPDVSKKTEAIIRAVAEMGAQLDMDIVAEGLEKIEQVKAVREAGCTLGQGYYFSRAVPDYLAAMLLA
QERESEDGLRKVG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=425, Percent_Identity=31.7647058823529, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI87081921, Length=452, Percent_Identity=30.0884955752212, Blast_Score=215, Evalue=7e-57,
Organism=Escherichia coli, GI226510982, Length=412, Percent_Identity=29.6116504854369, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI87081845, Length=249, Percent_Identity=35.3413654618474, Blast_Score=142, Evalue=8e-35,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=34.3096234309623, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=32.618025751073, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1787055, Length=400, Percent_Identity=26.25, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87081743, Length=253, Percent_Identity=32.0158102766798, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=29.2181069958848, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=30.2521008403361, Blast_Score=122, Evalue=9e-29,
Organism=Escherichia coli, GI1788381, Length=351, Percent_Identity=25.6410256410256, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1787802, Length=200, Percent_Identity=31.5, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788849, Length=254, Percent_Identity=27.9527559055118, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=38.728323699422, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=33.7349397590361, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI87082096, Length=491, Percent_Identity=22.1995926680244, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=30.1675977653631, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=158, Percent_Identity=27.8481012658228, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=31.9018404907975, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1787410, Length=220, Percent_Identity=27.7272727272727, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=149, Percent_Identity=32.8859060402685, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1787056, Length=190, Percent_Identity=30.5263157894737, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=31.3609467455621, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=169, Percent_Identity=27.2189349112426, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 71633; Mature: 71502

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGRSLLTAIKRRMGRKTERDAISDRVRRLLVRTLYTQPSNLAIGAIMGAVCTSVTAWVT
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
QSTVITICVVLMTLIGFARVLMGHMLSPDNERTTTRKLELLYEAGAFSYAFLYGLIAALV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
MIYYPGSSAELLIVACALSYGIAVAARNAGSRLIAQGQLVLALGPIFTACLIVGTIPTLT
HHCCCCCCCHHHHHHHHHHHHHHEEECCCCCEEHCCCCEEEHHHHHHHHHHHHHHHHHHH
LAVSILLGGSATASIAKNLHRVLRASIASAETSERLARKMEIQAHTDVVTKLANRAGLNH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
QMVEKLMAISQDQMLAMYWLDIDRFKEVNDLLGHQTGDKVLVELAQRLKEAMPQNALVAR
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEE
FGGDEFTVVTEVGSRRHAEMLASEVHAELMRPMRIDGDRLEVGASIGVALLPDDGVDSDE
ECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCCCCCHHH
LMQKADLALYHAKVNGRKQTQFYDASMSRDLARKREIEAELRAAILKDELSIFFQPIVDL
HHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KTGRIRTFEALVRWFHPEKGELRPDEFIPVAEDSGLIVTLGNWITAQAAKAAAQWPEEVT
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEECCHHHHHHHHHHHCCCCCEE
LAVNLSPLQIKAPGASLGVLNALREAQLPPERLELEVTESLFLDDSEATELFINELAAKG
EEEECCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
VRFAMDDFGTGYSSLGYINKYPFSKIKVDRSFVSGPDVSKKTEAIIRAVAEMGAQLDMDI
HHHHHHHCCCCHHHCCCCCCCCCHHEEECHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHH
VAEGLEKIEQVKAVREAGCTLGQGYYFSRAVPDYLAAMLLAQERESEDGLRKVG
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure 
PGRSLLTAIKRRMGRKTERDAISDRVRRLLVRTLYTQPSNLAIGAIMGAVCTSVTAWVT
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
QSTVITICVVLMTLIGFARVLMGHMLSPDNERTTTRKLELLYEAGAFSYAFLYGLIAALV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
MIYYPGSSAELLIVACALSYGIAVAARNAGSRLIAQGQLVLALGPIFTACLIVGTIPTLT
HHCCCCCCCHHHHHHHHHHHHHHEEECCCCCEEHCCCCEEEHHHHHHHHHHHHHHHHHHH
LAVSILLGGSATASIAKNLHRVLRASIASAETSERLARKMEIQAHTDVVTKLANRAGLNH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
QMVEKLMAISQDQMLAMYWLDIDRFKEVNDLLGHQTGDKVLVELAQRLKEAMPQNALVAR
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEE
FGGDEFTVVTEVGSRRHAEMLASEVHAELMRPMRIDGDRLEVGASIGVALLPDDGVDSDE
ECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCCCCCHHH
LMQKADLALYHAKVNGRKQTQFYDASMSRDLARKREIEAELRAAILKDELSIFFQPIVDL
HHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KTGRIRTFEALVRWFHPEKGELRPDEFIPVAEDSGLIVTLGNWITAQAAKAAAQWPEEVT
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEECCHHHHHHHHHHHCCCCCEE
LAVNLSPLQIKAPGASLGVLNALREAQLPPERLELEVTESLFLDDSEATELFINELAAKG
EEEECCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
VRFAMDDFGTGYSSLGYINKYPFSKIKVDRSFVSGPDVSKKTEAIIRAVAEMGAQLDMDI
HHHHHHHCCCCHHHCCCCCCCCCHHEEECHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHH
VAEGLEKIEQVKAVREAGCTLGQGYYFSRAVPDYLAAMLLAQERESEDGLRKVG
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]