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The map label for this gene is yciR [C]

Identifier: 85373849

GI number: 85373849

Start: 1055550

End: 1056395

Strand: Direct

Name: yciR [C]

Synonym: ELI_05110

Alternate gene names: 85373849

Gene position: 1055550-1056395 (Clockwise)

Preceding gene: 85373847

Following gene: 85373852

Centisome position: 34.58

GC content: 62.77

Gene sequence:

>846_bases
ATGGTTGCCCAGGCAGAGGCTAAGAACGAAGCGATGTCCGATGCGATGATTCTCGACGCCGAAACGGGGCCCGACCTGGG
GCGGGTTCTCGACCACGCGCCCAATCTCGCCGATGCGATTGCCGCCGGTGAGATCGAGACCGTGTACCAGCCGCAGTTTA
CCCTGCCGGATGACAGGCTGATCGGGGCGGAGGCGCTTGCGCGGTGGCAGCACCCCGAACTGGGCACGATCGGCGCCGCG
CCGTTATTTGCTATCGCGGCCCAGCAGGGCGTGATGACGAAGCTGTCCGAACATATCGTCGACAATGCCTTGCGAGAGGT
GATCCATTGGCCCGCGAATGTGCGCCTGTCGGTGAATATCCTGCCTGAGGAAGTGGCGCGGGAAGGGTTCGCTGACGCAT
TCATCGTGCGCATGGCCGAAGCCGGCATCGAACCCAAGCGACTGACGGTCGAGATAACCGAGGAAGTATTACTCGGTAAT
CTGCCCAAAGCTGCGGTGACCCTGGCGGCATTGCGCGACGAAGGAGTGCGAACCGCGCTGGACGATTTCGGCGCGGGCTT
TTGCAACTTCCGTTATCTCAAGATCCTGCCGCTCGATTACCTCAAGCTCGATCGCTCGATGGTCGAGGGCATCACGCGCG
ACGAGCGCGATCTGGCCGTCCTGCGCGGCATTGTCGCCATGGCAAGCGCGCTCGGCTTGCGCGTAATTGCCGAGGGGATC
GAGCATGAGGATCAGCGCACAATCGTCGCCGAGGAAGGCTGCGATACGTACCAGGGTTTCGTGCGCGCGGCCCCGATGTC
GGCAATGCGGTTCCGGGAACTGGCGCTGCCTCAGGCAGCTTTCTGA

Upstream 100 bases:

>100_bases
GAAGGAATTATTCTGGCCCAAACCCGCTCTCCACTATTGCCGTCCGCAGGCTTCCTATGGAGGACCGTGCCATTTGGCAA
CGCACCGGCTTTTGAGCGGG

Downstream 100 bases:

>100_bases
GCATTGCGATAGCGGCGCGCCACGCCGCTCAGGCCCTTGGTCAATTGGAACAGGCCGTTCAGCCGACTTTGCGGATCGCC
CCAGGCGCGGTTGATGACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MVAQAEAKNEAMSDAMILDAETGPDLGRVLDHAPNLADAIAAGEIETVYQPQFTLPDDRLIGAEALARWQHPELGTIGAA
PLFAIAAQQGVMTKLSEHIVDNALREVIHWPANVRLSVNILPEEVAREGFADAFIVRMAEAGIEPKRLTVEITEEVLLGN
LPKAAVTLAALRDEGVRTALDDFGAGFCNFRYLKILPLDYLKLDRSMVEGITRDERDLAVLRGIVAMASALGLRVIAEGI
EHEDQRTIVAEEGCDTYQGFVRAAPMSAMRFRELALPQAAF

Sequences:

>Translated_281_residues
MVAQAEAKNEAMSDAMILDAETGPDLGRVLDHAPNLADAIAAGEIETVYQPQFTLPDDRLIGAEALARWQHPELGTIGAA
PLFAIAAQQGVMTKLSEHIVDNALREVIHWPANVRLSVNILPEEVAREGFADAFIVRMAEAGIEPKRLTVEITEEVLLGN
LPKAAVTLAALRDEGVRTALDDFGAGFCNFRYLKILPLDYLKLDRSMVEGITRDERDLAVLRGIVAMASALGLRVIAEGI
EHEDQRTIVAEEGCDTYQGFVRAAPMSAMRFRELALPQAAF
>Mature_281_residues
MVAQAEAKNEAMSDAMILDAETGPDLGRVLDHAPNLADAIAAGEIETVYQPQFTLPDDRLIGAEALARWQHPELGTIGAA
PLFAIAAQQGVMTKLSEHIVDNALREVIHWPANVRLSVNILPEEVAREGFADAFIVRMAEAGIEPKRLTVEITEEVLLGN
LPKAAVTLAALRDEGVRTALDDFGAGFCNFRYLKILPLDYLKLDRSMVEGITRDERDLAVLRGIVAMASALGLRVIAEGI
EHEDQRTIVAEEGCDTYQGFVRAAPMSAMRFRELALPQAAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=240, Percent_Identity=32.0833333333333, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87081921, Length=237, Percent_Identity=31.2236286919831, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=27.8481012658228, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=27.6859504132231, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=31.9502074688797, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI226510982, Length=273, Percent_Identity=28.2051282051282, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788502, Length=232, Percent_Identity=28.8793103448276, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=26.3157894736842, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI87081743, Length=254, Percent_Identity=27.1653543307087, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI87081980, Length=235, Percent_Identity=26.8085106382979, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082096, Length=205, Percent_Identity=27.8048780487805, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788849, Length=155, Percent_Identity=32.258064516129, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787410, Length=145, Percent_Identity=24.1379310344828, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 30598; Mature: 30598

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAQAEAKNEAMSDAMILDAETGPDLGRVLDHAPNLADAIAAGEIETVYQPQFTLPDDRL
CCCCCHHHHHHHHCEEEEECCCCCHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCH
IGAEALARWQHPELGTIGAAPLFAIAAQQGVMTKLSEHIVDNALREVIHWPANVRLSVNI
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
LPEEVAREGFADAFIVRMAEAGIEPKRLTVEITEEVLLGNLPKAAVTLAALRDEGVRTAL
CHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHCCCHHHHH
DDFGAGFCNFRYLKILPLDYLKLDRSMVEGITRDERDLAVLRGIVAMASALGLRVIAEGI
HHHCCCHHCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EHEDQRTIVAEEGCDTYQGFVRAAPMSAMRFRELALPQAAF
CCCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVAQAEAKNEAMSDAMILDAETGPDLGRVLDHAPNLADAIAAGEIETVYQPQFTLPDDRL
CCCCCHHHHHHHHCEEEEECCCCCHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCH
IGAEALARWQHPELGTIGAAPLFAIAAQQGVMTKLSEHIVDNALREVIHWPANVRLSVNI
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
LPEEVAREGFADAFIVRMAEAGIEPKRLTVEITEEVLLGNLPKAAVTLAALRDEGVRTAL
CHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHCCCHHHHH
DDFGAGFCNFRYLKILPLDYLKLDRSMVEGITRDERDLAVLRGIVAMASALGLRVIAEGI
HHHCCCHHCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EHEDQRTIVAEEGCDTYQGFVRAAPMSAMRFRELALPQAAF
CCCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]