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The map label for this gene is intF [C]

Identifier: 85373645

GI number: 85373645

Start: 845044

End: 846216

Strand: Direct

Name: intF [C]

Synonym: ELI_04090

Alternate gene names: 85373645

Gene position: 845044-846216 (Clockwise)

Preceding gene: 85373644

Following gene: 85373646

Centisome position: 27.68

GC content: 61.64

Gene sequence:

>1173_bases
ATGGTCCCCAAACGTCGAAGGTCTGCCCGTAGAGCGCTTCTCGATGGCAATTTTGCCCGCCGCAAACTGCCGCAGCGCGA
ACGCGAATACTGCATCTGGGACACCGAGCTGGCAGGCTTCGGTCTTCGCGTAAGGCCGAGCGGGAACTACTTCTGGTTCG
TTCGCTTGCGGCATCGCGGCAAGCATCGGCGCATCACCCTTGGCCGGACCGACGAGCTTGAGGCGGGACTGGCAAGGGCG
CAGGCTCGCCGCATTCTTGCAGAAACCGCGCTCGACGGATTGCCCAAGCGCGCAGTGGTGAAGGCCACCCCAACGATGAC
CGATTTCGTCGAGGCTTATTGGGATGATCTATCCCGCGTCTGGAAGCCCTCGACCACCAAACGAAATTGGGATGCGTGGC
GGCTCGATATCAAGCCTACGTTTGGCGACACGCGCGTGGCGGACATCCTTCCAGCAGACATCCACCGCTGGCGCGATGGA
TGCGCGGGAGAGAGCGAGGTGAAGTTCAACCGCGCCGTGCCCGTGCTGTCCGCGCTGCTCAAATATGCCGAGGCGCTCAA
GATGCGTCGGCCAGGTTCGAACCCCTGTCGAGGAATGCCGCGCTACAAGCGGCAAAGCGTCGAACGCTATTTGACGCCAG
CCGAGTATCGCCGGATCGGAGCGGCATTGCGAGAGGCTGAGGCAGACCGACCGGCAGAGGTCGCAATCGCTCGCCTGCTC
TTGTTCACCGGCGCGCGCGTGGGCGAGATCAAGAATCTGCGCTGGGAGTGGGTGAAGCCACCGCGACTGCTGCTGCCAGA
CAGCAAGACCGGTCCCAAGGTGATCTGGCTCAATTCGCAGGCGCAGGACGTACTTGCGGTGATCGAGCGGCGCGAAGATA
GCGAGCTGGTATTCCCGAACAAGACCGGCAAGCGTCCGGTGAACTTCGATCAGTGGTGGTTCGTTTTCCGGCGGCGCTGC
GCATTGCCCGACGTTCGTATCCATGATTTGCGCCACAGCTTTGCTTCAACAGCGATTATGGAAAACGTGCCGCTATCGAC
CATCGGCAAGCTGCTGGGCCACAAGCTGGTTGAGACGACCGCCAAATATGCGCATCTGTCCGATGATGTGATCGGCGAAG
CCGCCGAGCGGATTTCCGGCTCGCTGGCGCAAGCTATTGGCCTCAGGCCATGA

Upstream 100 bases:

>100_bases
AGTGCTCGGCAGAGAGGGTGCTGTTGAATGCCGCCCGGTCCCCGCAAATGACAGTAATTCCAAGGGTTCTGGGGGCAGTT
TGCATGAGGGCGAATGCCAT

Downstream 100 bases:

>100_bases
CCGCCGCCAGTCTCAAGAAGATCGTCGAAGAGGCGCTTGCCGAGGTCGGGGCAACGGTCAACTTCAAGCTCGTTCCCAAA
GGCAAGGCGCGCACCACGAC

Product: site-specific recombinase, phage integrase family protein

Products: NA

Alternate protein names: Phage Integrase Family Protein; Integrase Family Protein; Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; Phage-Related Integrase; Phage Related Integrase; Site Specific Recombinase; Site-Specific Recombinase XerD; Site-Specific Recombinase/Integrase; Tyrosine Type Site-Specific Recombinase; Prophage; Prophage Integrase; Integrase Protein; LOW QUALITY PROTEIN Phage Integrase; Tyrosine Recombinase XerC; Shufflon-Specific DNA Recombinase; Tyrosine Recombinase XerD; Phage Integrase-Like Protein; Bacteriophage Integrase; Tyrosine Site-Specific Integrase/Recombinase Protein

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MVPKRRRSARRALLDGNFARRKLPQREREYCIWDTELAGFGLRVRPSGNYFWFVRLRHRGKHRRITLGRTDELEAGLARA
QARRILAETALDGLPKRAVVKATPTMTDFVEAYWDDLSRVWKPSTTKRNWDAWRLDIKPTFGDTRVADILPADIHRWRDG
CAGESEVKFNRAVPVLSALLKYAEALKMRRPGSNPCRGMPRYKRQSVERYLTPAEYRRIGAALREAEADRPAEVAIARLL
LFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKVIWLNSQAQDVLAVIERREDSELVFPNKTGKRPVNFDQWWFVFRRRC
ALPDVRIHDLRHSFASTAIMENVPLSTIGKLLGHKLVETTAKYAHLSDDVIGEAAERISGSLAQAIGLRP

Sequences:

>Translated_390_residues
MVPKRRRSARRALLDGNFARRKLPQREREYCIWDTELAGFGLRVRPSGNYFWFVRLRHRGKHRRITLGRTDELEAGLARA
QARRILAETALDGLPKRAVVKATPTMTDFVEAYWDDLSRVWKPSTTKRNWDAWRLDIKPTFGDTRVADILPADIHRWRDG
CAGESEVKFNRAVPVLSALLKYAEALKMRRPGSNPCRGMPRYKRQSVERYLTPAEYRRIGAALREAEADRPAEVAIARLL
LFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKVIWLNSQAQDVLAVIERREDSELVFPNKTGKRPVNFDQWWFVFRRRC
ALPDVRIHDLRHSFASTAIMENVPLSTIGKLLGHKLVETTAKYAHLSDDVIGEAAERISGSLAQAIGLRP
>Mature_390_residues
MVPKRRRSARRALLDGNFARRKLPQREREYCIWDTELAGFGLRVRPSGNYFWFVRLRHRGKHRRITLGRTDELEAGLARA
QARRILAETALDGLPKRAVVKATPTMTDFVEAYWDDLSRVWKPSTTKRNWDAWRLDIKPTFGDTRVADILPADIHRWRDG
CAGESEVKFNRAVPVLSALLKYAEALKMRRPGSNPCRGMPRYKRQSVERYLTPAEYRRIGAALREAEADRPAEVAIARLL
LFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKVIWLNSQAQDVLAVIERREDSELVFPNKTGKRPVNFDQWWFVFRRRC
ALPDVRIHDLRHSFASTAIMENVPLSTIGKLLGHKLVETTAKYAHLSDDVIGEAAERISGSLAQAIGLRP

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44772; Mature: 44772

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPKRRRSARRALLDGNFARRKLPQREREYCIWDTELAGFGLRVRPSGNYFWFVRLRHRG
CCCCHHHHHHHHHHCCCHHHHCCCHHHCCEEEEECHHCCCCEEEEECCCEEEEEEEECCC
KHRRITLGRTDELEAGLARAQARRILAETALDGLPKRAVVKATPTMTDFVEAYWDDLSRV
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHH
WKPSTTKRNWDAWRLDIKPTFGDTRVADILPADIHRWRDGCAGESEVKFNRAVPVLSALL
CCCCCCCCCCCEEEEEEECCCCCCHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
KYAEALKMRRPGSNPCRGMPRYKRQSVERYLTPAEYRRIGAALREAEADRPAEVAIARLL
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKVIWLNSQAQDVLAVIERREDSELVFPN
HHHCCCHHHHCCCCEEECCCCEEECCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEECCC
KTGKRPVNFDQWWFVFRRRCALPDVRIHDLRHSFASTAIMENVPLSTIGKLLGHKLVETT
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AKYAHLSDDVIGEAAERISGSLAQAIGLRP
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVPKRRRSARRALLDGNFARRKLPQREREYCIWDTELAGFGLRVRPSGNYFWFVRLRHRG
CCCCHHHHHHHHHHCCCHHHHCCCHHHCCEEEEECHHCCCCEEEEECCCEEEEEEEECCC
KHRRITLGRTDELEAGLARAQARRILAETALDGLPKRAVVKATPTMTDFVEAYWDDLSRV
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHH
WKPSTTKRNWDAWRLDIKPTFGDTRVADILPADIHRWRDGCAGESEVKFNRAVPVLSALL
CCCCCCCCCCCEEEEEEECCCCCCHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
KYAEALKMRRPGSNPCRGMPRYKRQSVERYLTPAEYRRIGAALREAEADRPAEVAIARLL
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKVIWLNSQAQDVLAVIERREDSELVFPN
HHHCCCHHHHCCCCEEECCCCEEECCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEECCC
KTGKRPVNFDQWWFVFRRRCALPDVRIHDLRHSFASTAIMENVPLSTIGKLLGHKLVETT
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AKYAHLSDDVIGEAAERISGSLAQAIGLRP
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA