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The map label for this gene is virB10 [H]

Identifier: 85373475

GI number: 85373475

Start: 683605

End: 684711

Strand: Direct

Name: virB10 [H]

Synonym: ELI_03240

Alternate gene names: 85373475

Gene position: 683605-684711 (Clockwise)

Preceding gene: 85373474

Following gene: 85373476

Centisome position: 22.4

GC content: 69.92

Gene sequence:

>1107_bases
ATGCGACTTCCGGACAAGGACAGCGGCAGCTTCGGCGCCAACGACGTCGACCCGCGCGAGACCCAGGATGCGGATGTCAC
CGATCTCGCCAGCCGGACAAGCTATCCCGCCGTTGCCAACAAGGGCGGCAAGTCGGATGCGATGGGGCTGGTGGCCGGCA
TCGCCATCGTCGCTGCGCTCGGCGCGGTCACATTCTGGAGCATGAACGCCGCGCAGGTGCCGCCGCCCGAAGGCGTGGGC
AGCGCGCAGGTAGAGCAGGCTCCGGTCCAGGCGCAGGCCCCGCAGCAGGCGGTCGCGCCGGCACCTGTCGCCGCGCCGCG
ACCCGATCCGGCACCTGCCCCGGTCTATGCGCAGAGTCCCGATGCCGTGACCGTTCCGCGCGCCAATCCCAACGCGAGCC
CGTCGCTGGTGTTCGATGCCAGCGCCCGCGCGGCAGGGCCCGAAGCCGCGGTTGCGCCCGGAACGGCGTCGGCCTTGCCG
GGGGGCGGCAACGCGAGCGGCAATTCGGCCAACGATTTCGCCAGTCGCGTAGGAGGCGTGGGCGGCGGCCCGGCGCAGGC
CGCGCGGATGGTCAACCCGGCGACCACGGTGACCCAGGGCACGCTGATCCCGGCCATTCTCGAAACCGCCATCGACACCG
ATGTGCCGGGCTTCGTGCGTGCCGTGGTGAGCCAGGATGTCCGTAGTTTCGACGGCAAGAACGTGCTCGTCCCCCGTTCC
AGCCGCCTGGTCGGTCAATATCAGTCGGGCGTGCAGGGCGGGCAGAAGCGCGCCTATGTTATCTGGACCCGCCTGATCCG
GCCCGACGGTGTGTCCGTACCGCTGCAGTCGCCGGCCATCGGTTTCGATGGCACCACCGGCCTCAGGGGCGACGTGAACA
GTCGCTTCTTCCAGCGTTTCGGTTCGGCCATGCTGCTCTCGGTCGTCGGCGGCCTTGGCGCTATCGCCAGTGGCGGGGCG
TCGGTCGTTATCGGCGGGGCCGGGCAATCGGCCGCCGCGGCAGCCGTGCAGCAGGACAGTCAGGTCGGCCCGGTCATCCG
GGTCCGCCAAGGTGAACCGATCCGCGTGTTCACTGCCCGCGATCTCGATTTCTCGACGGTGATGTAG

Upstream 100 bases:

>100_bases
CTCGTCAACACCGGGCCGGTCGGCAAACCGGCCTCGCCCCAGCAAGCCCAGCTTGCCGGCGGGCGCTGAGGATTAAAGGA
GCATGGCAATGCGTTTGGCA

Downstream 100 bases:

>100_bases
GCGAAGGCCAGGCCGATGAGCGCGGACGTCCATCCCTTTGCGAAACAGGCCGAAGCGGCGGAAACCCCGCTGCCGGGCGA
TCGCAGCGTCTATCTCGAGG

Product: type IV secretion system protein B10, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MRLPDKDSGSFGANDVDPRETQDADVTDLASRTSYPAVANKGGKSDAMGLVAGIAIVAALGAVTFWSMNAAQVPPPEGVG
SAQVEQAPVQAQAPQQAVAPAPVAAPRPDPAPAPVYAQSPDAVTVPRANPNASPSLVFDASARAAGPEAAVAPGTASALP
GGGNASGNSANDFASRVGGVGGGPAQAARMVNPATTVTQGTLIPAILETAIDTDVPGFVRAVVSQDVRSFDGKNVLVPRS
SRLVGQYQSGVQGGQKRAYVIWTRLIRPDGVSVPLQSPAIGFDGTTGLRGDVNSRFFQRFGSAMLLSVVGGLGAIASGGA
SVVIGGAGQSAAAAAVQQDSQVGPVIRVRQGEPIRVFTARDLDFSTVM

Sequences:

>Translated_368_residues
MRLPDKDSGSFGANDVDPRETQDADVTDLASRTSYPAVANKGGKSDAMGLVAGIAIVAALGAVTFWSMNAAQVPPPEGVG
SAQVEQAPVQAQAPQQAVAPAPVAAPRPDPAPAPVYAQSPDAVTVPRANPNASPSLVFDASARAAGPEAAVAPGTASALP
GGGNASGNSANDFASRVGGVGGGPAQAARMVNPATTVTQGTLIPAILETAIDTDVPGFVRAVVSQDVRSFDGKNVLVPRS
SRLVGQYQSGVQGGQKRAYVIWTRLIRPDGVSVPLQSPAIGFDGTTGLRGDVNSRFFQRFGSAMLLSVVGGLGAIASGGA
SVVIGGAGQSAAAAAVQQDSQVGPVIRVRQGEPIRVFTARDLDFSTVM
>Mature_368_residues
MRLPDKDSGSFGANDVDPRETQDADVTDLASRTSYPAVANKGGKSDAMGLVAGIAIVAALGAVTFWSMNAAQVPPPEGVG
SAQVEQAPVQAQAPQQAVAPAPVAAPRPDPAPAPVYAQSPDAVTVPRANPNASPSLVFDASARAAGPEAAVAPGTASALP
GGGNASGNSANDFASRVGGVGGGPAQAARMVNPATTVTQGTLIPAILETAIDTDVPGFVRAVVSQDVRSFDGKNVLVPRS
SRLVGQYQSGVQGGQKRAYVIWTRLIRPDGVSVPLQSPAIGFDGTTGLRGDVNSRFFQRFGSAMLLSVVGGLGAIASGGA
SVVIGGAGQSAAAAAVQQDSQVGPVIRVRQGEPIRVFTARDLDFSTVM

Specific function: VirB proteins are suggested to act at the bacterial surface and there play an important role in directing T-DNA transfer to plant cells [H]

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 36983; Mature: 36983

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPDKDSGSFGANDVDPRETQDADVTDLASRTSYPAVANKGGKSDAMGLVAGIAIVAAL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHH
GAVTFWSMNAAQVPPPEGVGSAQVEQAPVQAQAPQQAVAPAPVAAPRPDPAPAPVYAQSP
HHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHCCCHHHCCCCCCCCCCCCCCCCCCEECCC
DAVTVPRANPNASPSLVFDASARAAGPEAAVAPGTASALPGGGNASGNSANDFASRVGGV
CEEECCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCC
GGGPAQAARMVNPATTVTQGTLIPAILETAIDTDVPGFVRAVVSQDVRSFDGKNVLVPRS
CCCHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCC
SRLVGQYQSGVQGGQKRAYVIWTRLIRPDGVSVPLQSPAIGFDGTTGLRGDVNSRFFQRF
HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
GSAMLLSVVGGLGAIASGGASVVIGGAGQSAAAAAVQQDSQVGPVIRVRQGEPIRVFTAR
HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEC
DLDFSTVM
CCCHHHCC
>Mature Secondary Structure
MRLPDKDSGSFGANDVDPRETQDADVTDLASRTSYPAVANKGGKSDAMGLVAGIAIVAAL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHH
GAVTFWSMNAAQVPPPEGVGSAQVEQAPVQAQAPQQAVAPAPVAAPRPDPAPAPVYAQSP
HHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHCCCHHHCCCCCCCCCCCCCCCCCCEECCC
DAVTVPRANPNASPSLVFDASARAAGPEAAVAPGTASALPGGGNASGNSANDFASRVGGV
CEEECCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCC
GGGPAQAARMVNPATTVTQGTLIPAILETAIDTDVPGFVRAVVSQDVRSFDGKNVLVPRS
CCCHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCC
SRLVGQYQSGVQGGQKRAYVIWTRLIRPDGVSVPLQSPAIGFDGTTGLRGDVNSRFFQRF
HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
GSAMLLSVVGGLGAIASGGASVVIGGAGQSAAAAAVQQDSQVGPVIRVRQGEPIRVFTAR
HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEC
DLDFSTVM
CCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2837739 [H]