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The map label for this gene is virB9 [H]

Identifier: 85373474

GI number: 85373474

Start: 682800

End: 683573

Strand: Direct

Name: virB9 [H]

Synonym: ELI_03235

Alternate gene names: 85373474

Gene position: 682800-683573 (Clockwise)

Preceding gene: 85373473

Following gene: 85373475

Centisome position: 22.37

GC content: 63.82

Gene sequence:

>774_bases
ATGATCCGCGCAGGTCTTCCCGCGCTCTCACTCGTGCTGATGGCGACACCGCTTGCGGCCCAGGATTCACGCCTGGTCGA
GGTACTCTACGATCCGTCCCGCGTGGTCACCATCGAGGGCCGCACCAAGGTGCAAGCGACAATCAAGTTCGGCGACAACG
AGTCGATCGAAAACGTCGCGATCGGCGACAGCACTGCGTGGCAGGTCACGCCCAACAAGCGCGCCAACCTGCTGTTCGTG
AAACCGCTCGAAGCTACCGCCAAGACCAATATGACGGTGGTCACCAACAAGCACACCTACCTGTTCGACCTGATCGCGAG
CCCGCGCGCCAATCCGCTCTATGTCCTGAGCTTCACCTATCCGGAGGAGCCGGAGGACGAGCAGGACGCGCAACTCGCGG
CGACCGGAGAGGCCAACCCGCTGGAAGTGGCGGCGGCGACCGATCCCTATGCCGTGATCGACCCGGCGACCCTCAACTGG
TCATGGGCCAAGGATGGCGACCCTGCGCTGTTTCCGCTGCGCGCGTTCGACGATGGCGAAGCGACCTTCCTCGAATGGGA
TACGAGGACCCCCGTTCCGGCAATACTGGTCAAGAATGTCGAAGGTGAAGAGGGCCCGGTCAATTTTACCGTGCGGGGCA
ACACCATCGTGGTCGACGGTGTCCCGCGCGAGATCATTCTGCGGTCGGGCGATGAAGTCGCGACTCTCGTCAACACCGGG
CCGGTCGGCAAACCGGCCTCGCCCCAGCAAGCCCAGCTTGCCGGCGGGCGCTGA

Upstream 100 bases:

>100_bases
GTGCCGGTCAGGCAACCCCCGCTAGCGACCCCACCGCGCGCACTCGCGGGCTTGGCACACGTTTCAAGTCCGCGCCGCCG
CGATCAATGGAGAAAATGAA

Downstream 100 bases:

>100_bases
GGATTAAAGGAGCATGGCAATGCGTTTGGCAATGCGACTTCCGGACAAGGACAGCGGCAGCTTCGGCGCCAACGACGTCG
ACCCGCGCGAGACCCAGGAT

Product: type IV secretion system protein B9, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MIRAGLPALSLVLMATPLAAQDSRLVEVLYDPSRVVTIEGRTKVQATIKFGDNESIENVAIGDSTAWQVTPNKRANLLFV
KPLEATAKTNMTVVTNKHTYLFDLIASPRANPLYVLSFTYPEEPEDEQDAQLAATGEANPLEVAAATDPYAVIDPATLNW
SWAKDGDPALFPLRAFDDGEATFLEWDTRTPVPAILVKNVEGEEGPVNFTVRGNTIVVDGVPREIILRSGDEVATLVNTG
PVGKPASPQQAQLAGGR

Sequences:

>Translated_257_residues
MIRAGLPALSLVLMATPLAAQDSRLVEVLYDPSRVVTIEGRTKVQATIKFGDNESIENVAIGDSTAWQVTPNKRANLLFV
KPLEATAKTNMTVVTNKHTYLFDLIASPRANPLYVLSFTYPEEPEDEQDAQLAATGEANPLEVAAATDPYAVIDPATLNW
SWAKDGDPALFPLRAFDDGEATFLEWDTRTPVPAILVKNVEGEEGPVNFTVRGNTIVVDGVPREIILRSGDEVATLVNTG
PVGKPASPQQAQLAGGR
>Mature_257_residues
MIRAGLPALSLVLMATPLAAQDSRLVEVLYDPSRVVTIEGRTKVQATIKFGDNESIENVAIGDSTAWQVTPNKRANLLFV
KPLEATAKTNMTVVTNKHTYLFDLIASPRANPLYVLSFTYPEEPEDEQDAQLAATGEANPLEVAAATDPYAVIDPATLNW
SWAKDGDPALFPLRAFDDGEATFLEWDTRTPVPAILVKNVEGEEGPVNFTVRGNTIVVDGVPREIILRSGDEVATLVNTG
PVGKPASPQQAQLAGGR

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 27678; Mature: 27678

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRAGLPALSLVLMATPLAAQDSRLVEVLYDPSRVVTIEGRTKVQATIKFGDNESIENVA
CCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCEEEEEEEEECCCCCCCEEE
IGDSTAWQVTPNKRANLLFVKPLEATAKTNMTVVTNKHTYLFDLIASPRANPLYVLSFTY
ECCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCEEEEEEEEC
PEEPEDEQDAQLAATGEANPLEVAAATDPYAVIDPATLNWSWAKDGDPALFPLRAFDDGE
CCCCCCCCCCEEEECCCCCCEEEEECCCCEEEECCCEEEEEECCCCCCEEEEEEECCCCC
ATFLEWDTRTPVPAILVKNVEGEEGPVNFTVRGNTIVVDGVPREIILRSGDEVATLVNTG
EEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCEEEECCCCCEEEEECCCCEEEEEECC
PVGKPASPQQAQLAGGR
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRAGLPALSLVLMATPLAAQDSRLVEVLYDPSRVVTIEGRTKVQATIKFGDNESIENVA
CCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCEEEEEEEEECCCCCCCEEE
IGDSTAWQVTPNKRANLLFVKPLEATAKTNMTVVTNKHTYLFDLIASPRANPLYVLSFTY
ECCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCEEEEEEEEC
PEEPEDEQDAQLAATGEANPLEVAAATDPYAVIDPATLNWSWAKDGDPALFPLRAFDDGE
CCCCCCCCCCEEEECCCCCCEEEEECCCCEEEECCCEEEEEECCCCCCEEEEEEECCCCC
ATFLEWDTRTPVPAILVKNVEGEEGPVNFTVRGNTIVVDGVPREIILRSGDEVATLVNTG
EEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCEEEECCCCCEEEEECCCCEEEEEECC
PVGKPASPQQAQLAGGR
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA