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The map label for this gene is lppB [H]

Identifier: 85372947

GI number: 85372947

Start: 152913

End: 153695

Strand: Reverse

Name: lppB [H]

Synonym: ELI_00600

Alternate gene names: 85372947

Gene position: 153695-152913 (Counterclockwise)

Preceding gene: 85372948

Following gene: 85372946

Centisome position: 5.04

GC content: 64.88

Gene sequence:

>783_bases
ATGCGCCGCGCGGCTCTCCTCCTTCTCGCCGCGCCGCTGCTGCTGGCAGCGAACAATCCCAGGACGGCGACCGAATATGA
GGTCCAGACGGGCGATACGCTCGGCGGCATCGCCAACAAGACCGGCGTGCCGGCCCCGGTCATTGCCGCGGCCAATGGCA
TCCCGCCCCCCTACAATGTGCTGGTCGGCGAGAAGCTGGTCGTGCCGCGCCAGCGCAAGCACACTGTCAAAGCGGGCGAG
ACGGGGTTTGCCATCGCCCTCCAGTATGGCGTCCCGTTCGAGAACATTGCGATTGCCAATGGCCTGGACGAGGACGGCAC
GGTCAAGGTCGGGCAGGAGCTCATCATTCCCGCCGTGTTCCAGCCGCGCCGGGTGGCCCGCCGCTCGATCCCGAACTCAC
CCTACTTCCGGTGGCCGCATGACGGCAGGGTACTCTACGGTTTCAGCAGGCGCGAAGACGGCAGCGGGCACGACGGTATC
GATATCGACGTCGAAGTCGGCGACATGGTGCGCGCATCCTCCAGCGGCACGGTCGTTTTCGCCGACGAGGAGAAAACCCG
CTTCGGGCGACAGGTGCTGATCGACCACGGCAATGGCTGGCAGACATCCTATGGCCATCTCGCCCGGATCACAGTCCAGA
AAGGCGATGTGGTGAAGGCGGGCGAGCGGATCGGAATTGCCGGAGATGCCGGCAAGGCGACCCGTCCGGAACTGCATTTC
GAAATCCGCAGAGACGGCAAGGATGTCGACCCGGCAAGCAAATTGCCGCAGCGTCGCAAATAG

Upstream 100 bases:

>100_bases
ACCTGGAAGCCATCGACGAGGGATTTGTGTCCGTGACGCCCCTGCAGCTCGACCTCACCCAACACTCCCTGCTGTCCGTT
ATCGGCGAGAGGTTCGAGTG

Downstream 100 bases:

>100_bases
GCTAGTCGCCCGCGCAAGCTGTTGTGCGGATTGCTGAATGAGCGAACAAATCGACCGGTTTGAATCGGGTGGCAGACCCC
GGAGAGTGCGTGGGCCGCAG

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MRRAALLLLAAPLLLAANNPRTATEYEVQTGDTLGGIANKTGVPAPVIAAANGIPPPYNVLVGEKLVVPRQRKHTVKAGE
TGFAIALQYGVPFENIAIANGLDEDGTVKVGQELIIPAVFQPRRVARRSIPNSPYFRWPHDGRVLYGFSRREDGSGHDGI
DIDVEVGDMVRASSSGTVVFADEEKTRFGRQVLIDHGNGWQTSYGHLARITVQKGDVVKAGERIGIAGDAGKATRPELHF
EIRRDGKDVDPASKLPQRRK

Sequences:

>Translated_260_residues
MRRAALLLLAAPLLLAANNPRTATEYEVQTGDTLGGIANKTGVPAPVIAAANGIPPPYNVLVGEKLVVPRQRKHTVKAGE
TGFAIALQYGVPFENIAIANGLDEDGTVKVGQELIIPAVFQPRRVARRSIPNSPYFRWPHDGRVLYGFSRREDGSGHDGI
DIDVEVGDMVRASSSGTVVFADEEKTRFGRQVLIDHGNGWQTSYGHLARITVQKGDVVKAGERIGIAGDAGKATRPELHF
EIRRDGKDVDPASKLPQRRK
>Mature_260_residues
MRRAALLLLAAPLLLAANNPRTATEYEVQTGDTLGGIANKTGVPAPVIAAANGIPPPYNVLVGEKLVVPRQRKHTVKAGE
TGFAIALQYGVPFENIAIANGLDEDGTVKVGQELIIPAVFQPRRVARRSIPNSPYFRWPHDGRVLYGFSRREDGSGHDGI
DIDVEVGDMVRASSSGTVVFADEEKTRFGRQVLIDHGNGWQTSYGHLARITVQKGDVVKAGERIGIAGDAGKATRPELHF
EIRRDGKDVDPASKLPQRRK

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=278, Percent_Identity=26.6187050359712, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87082174, Length=206, Percent_Identity=29.126213592233, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082297, Length=115, Percent_Identity=34.7826086956522, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87081989, Length=102, Percent_Identity=37.2549019607843, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 28141; Mature: 28141

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRAALLLLAAPLLLAANNPRTATEYEVQTGDTLGGIANKTGVPAPVIAAANGIPPPYNV
CCHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCEE
LVGEKLVVPRQRKHTVKAGETGFAIALQYGVPFENIAIANGLDEDGTVKVGQELIIPAVF
EECCEEECCCCCCCEEECCCCCEEEEEEECCCHHHEEEECCCCCCCCEEECCEEEECCCC
QPRRVARRSIPNSPYFRWPHDGRVLYGFSRREDGSGHDGIDIDVEVGDMVRASSSGTVVF
CCHHHHHHCCCCCCCEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEECCCCEEEE
ADEEKTRFGRQVLIDHGNGWQTSYGHLARITVQKGDVVKAGERIGIAGDAGKATRPELHF
ECCHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCEEECCCEEEEECCCCCCCCCCEEE
EIRRDGKDVDPASKLPQRRK
EEECCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MRRAALLLLAAPLLLAANNPRTATEYEVQTGDTLGGIANKTGVPAPVIAAANGIPPPYNV
CCHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCEE
LVGEKLVVPRQRKHTVKAGETGFAIALQYGVPFENIAIANGLDEDGTVKVGQELIIPAVF
EECCEEECCCCCCCEEECCCCCEEEEEEECCCHHHEEEECCCCCCCCEEECCEEEECCCC
QPRRVARRSIPNSPYFRWPHDGRVLYGFSRREDGSGHDGIDIDVEVGDMVRASSSGTVVF
CCHHHHHHCCCCCCCEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEECCCCEEEE
ADEEKTRFGRQVLIDHGNGWQTSYGHLARITVQKGDVVKAGERIGIAGDAGKATRPELHF
ECCHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCEEECCCEEEEECCCCCCCCCCEEE
EIRRDGKDVDPASKLPQRRK
EEECCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]