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The map label for this gene is ygfF [C]

Identifier: 85060104

GI number: 85060104

Start: 3690465

End: 3691181

Strand: Reverse

Name: ygfF [C]

Synonym: SG2126

Alternate gene names: 85060104

Gene position: 3691181-3690465 (Counterclockwise)

Preceding gene: 85060106

Following gene: 85060103

Centisome position: 88.49

GC content: 54.67

Gene sequence:

>717_bases
TTGTTTGCTGATAGTGAACAGTCTTTCCGGTTTAACGCTTTTTATACAATTGGCACCTATCACTCCCACAAAGAGGAAGC
GCAGGCGCTGGTAAAGGAGATTGAATGGAGCGGCGGCAACGCGGCCATGCTGCAACTGGATACCGGCGATAGTCGCCGTT
TTGGCGATTTCGCCAGCGATTTGCAGCAGTTGTTGAGTGATAAGTTCAACCAGACGCAGTTTCACCATCTGGTCAACAAT
GCCGGGATTGGTATTCATGCTCCTTTTACCGCAACCGACGAAGAGCAATTCGACCAATTGATGCGCATCAATTTCAAGGG
CCCGTTTTTTCTGACCCGGGCGTTACTGCCGCTACTGGCCGACGGCGGCAGTATTTTGAATATGTCGAGCGTGCTTACTC
GATTCACCACGCCTGGTTTTGCCGCCTATGCGGCGACGAAAGGGGCGATGGAAGTGTTGACGCGTTATCAGGTCAAAGAG
CTGGGGGGCCGCGGGATTCGGGTCAATATTCTGGCGCCCGGCGCGATAGAATCGGATTTCGCCGGTGGCACGGTACGGGA
TAACAAGCAGGTAAATCAGGTCATCGCCGACAATACCGTTCTCGGACGTGTCGGGTTGCCCGATGATATCGGCGCGACGC
TCGTCGCGCTGCTGAGCGATAACTGTCACTGGATGACCGCTCAGCGCGTTGAAGCGTCGGGCGGGATGTACCTATGA

Upstream 100 bases:

>100_bases
GGCAGACCAAGCGTGTTGCCCGCCTGAGTAAAACTTGCCAGTTCCACCACCCAAACAAAGCTTTGTAGCAGCGCCAGTTT
ATTCATCGTCGCTCTTATGA

Downstream 100 bases:

>100_bases
TGGGGTGCGGTCGGTAGCGCCAGAGTGAGCCGTCAGGCCGCACGGCTCAGTCAGGGCGGTGCGTCGCTCTGATCTTCGCA
ATGCATGCCGGGTCAATGCC

Product: putative dehydrogenase

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MFADSEQSFRFNAFYTIGTYHSHKEEAQALVKEIEWSGGNAAMLQLDTGDSRRFGDFASDLQQLLSDKFNQTQFHHLVNN
AGIGIHAPFTATDEEQFDQLMRINFKGPFFLTRALLPLLADGGSILNMSSVLTRFTTPGFAAYAATKGAMEVLTRYQVKE
LGGRGIRVNILAPGAIESDFAGGTVRDNKQVNQVIADNTVLGRVGLPDDIGATLVALLSDNCHWMTAQRVEASGGMYL

Sequences:

>Translated_238_residues
MFADSEQSFRFNAFYTIGTYHSHKEEAQALVKEIEWSGGNAAMLQLDTGDSRRFGDFASDLQQLLSDKFNQTQFHHLVNN
AGIGIHAPFTATDEEQFDQLMRINFKGPFFLTRALLPLLADGGSILNMSSVLTRFTTPGFAAYAATKGAMEVLTRYQVKE
LGGRGIRVNILAPGAIESDFAGGTVRDNKQVNQVIADNTVLGRVGLPDDIGATLVALLSDNCHWMTAQRVEASGGMYL
>Mature_238_residues
MFADSEQSFRFNAFYTIGTYHSHKEEAQALVKEIEWSGGNAAMLQLDTGDSRRFGDFASDLQQLLSDKFNQTQFHHLVNN
AGIGIHAPFTATDEEQFDQLMRINFKGPFFLTRALLPLLADGGSILNMSSVLTRFTTPGFAAYAATKGAMEVLTRYQVKE
LGGRGIRVNILAPGAIESDFAGGTVRDNKQVNQVIADNTVLGRVGLPDDIGATLVALLSDNCHWMTAQRVEASGGMYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=165, Percent_Identity=32.7272727272727, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI15277342, Length=203, Percent_Identity=29.064039408867, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI126723750, Length=146, Percent_Identity=31.5068493150685, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI7705925, Length=164, Percent_Identity=27.4390243902439, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI59889578, Length=188, Percent_Identity=29.2553191489362, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367175, Length=232, Percent_Identity=30.1724137931034, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1789378, Length=232, Percent_Identity=31.8965517241379, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788459, Length=228, Percent_Identity=29.3859649122807, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787335, Length=227, Percent_Identity=28.6343612334802, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786701, Length=172, Percent_Identity=34.3023255813954, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI2367365, Length=211, Percent_Identity=27.4881516587678, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790717, Length=164, Percent_Identity=28.0487804878049, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=30.8900523560209, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789208, Length=195, Percent_Identity=28.7179487179487, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787905, Length=215, Percent_Identity=28.8372093023256, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=194, Percent_Identity=30.9278350515464, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=225, Percent_Identity=27.5555555555556, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=184, Percent_Identity=26.6304347826087, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=185, Percent_Identity=29.1891891891892, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=167, Percent_Identity=26.9461077844311, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=229, Percent_Identity=27.5109170305677, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=167, Percent_Identity=25.748502994012, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=176, Percent_Identity=29.5454545454545, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24643142, Length=120, Percent_Identity=39.1666666666667, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24639444, Length=214, Percent_Identity=29.9065420560748, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21355319, Length=181, Percent_Identity=28.7292817679558, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28571526, Length=184, Percent_Identity=30.9782608695652, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24644339, Length=191, Percent_Identity=29.8429319371728, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357041, Length=184, Percent_Identity=31.5217391304348, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24644337, Length=163, Percent_Identity=31.9018404907975, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI23397609, Length=181, Percent_Identity=28.7292817679558, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26030; Mature: 26030

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFADSEQSFRFNAFYTIGTYHSHKEEAQALVKEIEWSGGNAAMLQLDTGDSRRFGDFASD
CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHH
LQQLLSDKFNQTQFHHLVNNAGIGIHAPFTATDEEQFDQLMRINFKGPFFLTRALLPLLA
HHHHHHHHCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHC
DGGSILNMSSVLTRFTTPGFAAYAATKGAMEVLTRYQVKELGGRGIRVNILAPGAIESDF
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
AGGTVRDNKQVNQVIADNTVLGRVGLPDDIGATLVALLSDNCHWMTAQRVEASGGMYL
CCCCCCCCHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCCEEEHHEEECCCCCCC
>Mature Secondary Structure
MFADSEQSFRFNAFYTIGTYHSHKEEAQALVKEIEWSGGNAAMLQLDTGDSRRFGDFASD
CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHH
LQQLLSDKFNQTQFHHLVNNAGIGIHAPFTATDEEQFDQLMRINFKGPFFLTRALLPLLA
HHHHHHHHCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHC
DGGSILNMSSVLTRFTTPGFAAYAATKGAMEVLTRYQVKELGGRGIRVNILAPGAIESDF
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
AGGTVRDNKQVNQVIADNTVLGRVGLPDDIGATLVALLSDNCHWMTAQRVEASGGMYL
CCCCCCCCHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCCEEEHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]