Click here to switch to the map view.

The map label for this gene is ycfQ [H]

Identifier: 85060072

GI number: 85060072

Start: 3607751

End: 3608425

Strand: Reverse

Name: ycfQ [H]

Synonym: SG2094

Alternate gene names: 85060072

Gene position: 3608425-3607751 (Counterclockwise)

Preceding gene: 85060075

Following gene: 85060070

Centisome position: 86.51

GC content: 60.0

Gene sequence:

>675_bases
ATGAGCGACCATCAAGCCGCCTGTGTCAAAAAGGGGCGCGGGCGTCCGAAACAATTCGATCGTGAAGCCGCCCTGGACCA
GGCGTTGCAACTGTTTTGGCGCCATGGCTATGAAGCCACTTCCCTTGCCGATCTTGTCGAAGCTACGGGCGCCAAGGCGC
CTACGCTGTATGCGGAATTTGGTAATAAAGAAGGGCTGTTCCGCGCCGCGGCGGAACGCTATGTGACCAAGTTTGCCGAG
AAGGGTAAGGCCTTGCTGGCGCGTCCCGGTTTTACCGTCACCCAGGCCATCGAGGATTTTTACCGCGCCGCAGCCGGTAT
GTTTACCGATAAGAGCCTGCCGTCCGGCTGCTTCATTATTTGTACCTCGGCGGCGCTGGCAGCGTCGTCAGATGAAGTGG
CGCAGATCCTGCGCTCGCGTCACCATTTGCAGGAGCATACGTTACTGGATTTTCTGCTGGCGCGGCAACAGCAGGGGGAA
CTCCCGGCCGGCACCGACTGTGCCGTACTGGCGAAATATCTCGCCTGCTCGCTGCAGGGGATGTCGGTTCAGGCGCGTGA
CGGCGCCAGTGAAGAGGATCTCAACGGCATCGTCACCACCCTGATGGCTGTCTGGCCTACCTTAATCCAAACCTGCCGCC
AGGTGAGCGGTGTGCAGGCCACAGAACACGCCTGA

Upstream 100 bases:

>100_bases
GCGCACATATTGCAAAAAGCCCCTCGACACGGGGATGAGTATTTTTTATAATGATCATTAATTTAGTGCAATTTTTCACC
CATTCGGCAAGAGAGGAGCT

Downstream 100 bases:

>100_bases
TAGCGAGTGGCTAGGGCCTGATTGTTCTGGGGCCCTATTATCAACCGGCGCACCATTGCCTGATTAGGTCACCTGCGTGT
ATTGCCTGAACCGATGACCT

Product: putative transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSDHQAACVKKGRGRPKQFDREAALDQALQLFWRHGYEATSLADLVEATGAKAPTLYAEFGNKEGLFRAAAERYVTKFAE
KGKALLARPGFTVTQAIEDFYRAAAGMFTDKSLPSGCFIICTSAALAASSDEVAQILRSRHHLQEHTLLDFLLARQQQGE
LPAGTDCAVLAKYLACSLQGMSVQARDGASEEDLNGIVTTLMAVWPTLIQTCRQVSGVQATEHA

Sequences:

>Translated_224_residues
MSDHQAACVKKGRGRPKQFDREAALDQALQLFWRHGYEATSLADLVEATGAKAPTLYAEFGNKEGLFRAAAERYVTKFAE
KGKALLARPGFTVTQAIEDFYRAAAGMFTDKSLPSGCFIICTSAALAASSDEVAQILRSRHHLQEHTLLDFLLARQQQGE
LPAGTDCAVLAKYLACSLQGMSVQARDGASEEDLNGIVTTLMAVWPTLIQTCRQVSGVQATEHA
>Mature_223_residues
SDHQAACVKKGRGRPKQFDREAALDQALQLFWRHGYEATSLADLVEATGAKAPTLYAEFGNKEGLFRAAAERYVTKFAEK
GKALLARPGFTVTQAIEDFYRAAAGMFTDKSLPSGCFIICTSAALAASSDEVAQILRSRHHLQEHTLLDFLLARQQQGEL
PAGTDCAVLAKYLACSLQGMSVQARDGASEEDLNGIVTTLMAVWPTLIQTCRQVSGVQATEHA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=210, Percent_Identity=54.2857142857143, Blast_Score=233, Evalue=5e-63,
Organism=Escherichia coli, GI87082397, Length=181, Percent_Identity=27.6243093922652, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24282; Mature: 24151

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS50977 HTH_TETR_2 ; PS00354 HMGI_Y

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHQAACVKKGRGRPKQFDREAALDQALQLFWRHGYEATSLADLVEATGAKAPTLYAEF
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHC
GNKEGLFRAAAERYVTKFAEKGKALLARPGFTVTQAIEDFYRAAAGMFTDKSLPSGCFII
CCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
CTSAALAASSDEVAQILRSRHHLQEHTLLDFLLARQQQGELPAGTDCAVLAKYLACSLQG
EHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
MSVQARDGASEEDLNGIVTTLMAVWPTLIQTCRQVSGVQATEHA
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
SDHQAACVKKGRGRPKQFDREAALDQALQLFWRHGYEATSLADLVEATGAKAPTLYAEF
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHC
GNKEGLFRAAAERYVTKFAEKGKALLARPGFTVTQAIEDFYRAAAGMFTDKSLPSGCFII
CCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
CTSAALAASSDEVAQILRSRHHLQEHTLLDFLLARQQQGELPAGTDCAVLAKYLACSLQG
EHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
MSVQARDGASEEDLNGIVTTLMAVWPTLIQTCRQVSGVQATEHA
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]