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The map label for this gene is ycfD [H]

Identifier: 85059058

GI number: 85059058

Start: 1788743

End: 1789345

Strand: Reverse

Name: ycfD [H]

Synonym: SG1080

Alternate gene names: 85059058

Gene position: 1789345-1788743 (Counterclockwise)

Preceding gene: 85059059

Following gene: 85059053

Centisome position: 42.9

GC content: 58.21

Gene sequence:

>603_bases
TTGGAACAGGCTATGGATTATCAACTTGAGCTGGACTGGAATGACTTTTTACAACGCTACTGGCAGAAACGCCCAGTCAT
CATTAAACGCGCGTTTCGCGATTTCGTCGACCCGCTGTCTCCGGATGAACTGGCCGGTCTGGCTATGGAAGCGGAGGTGG
ATAGCCGTCTGGTCAGCCATGATGACGGCGACTGGCAGTTAAGCCACGGTCCGTTTACCAGCGATGACCATTTGGGCGAC
CACAACTGGTCGCTGCTGGTGCAGGCGGTCGATCACTGGCACGAGCCCTCGGCGGCGCTGATGCAGCCGTTCCGCCATCT
GCCCGACTGGCGGATAGACGATTTGATGATCTCGTTTTCGGTTCCCGGCGGCGGCGTCGGTCCCCATCTCGATCAGTATG
ATGTCTTTATTATCCAAGGCCAGGGCCGCCGGCACTGGCGCGTCGGCGATAAAACCCCGCTGAAGCAGCATTGTCCCCAT
CCCGATCTGCTGCAGGTTGAACCCTTTGAGGCCATCATCGACGAACAAATGGAGCCCGGCGATATGCTGTACATCCCCCC
CCCGGCTTCCCCCATGAAGGTTATGCGCTGGAGAACGCGCTAA

Upstream 100 bases:

>100_bases
GTCGGTCACGGGCGCTCCGTCACGTTTGACGCACCGCAGGTAAAATTATCCGGCCTGTGCGGCGGCGCTATCCGTTATAA
TTCCTCTCAATCTCCCTGCG

Downstream 100 bases:

>100_bases
ATTACTCCGTCGGCTTCAGGGCACCGAGCAGCCGCGAGCTGATCAGCGGTTTTGCCGATTATGTGCTTGCTCAAGAGCTG
GGCGGCCAGCGCTACTGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MEQAMDYQLELDWNDFLQRYWQKRPVIIKRAFRDFVDPLSPDELAGLAMEAEVDSRLVSHDDGDWQLSHGPFTSDDHLGD
HNWSLLVQAVDHWHEPSAALMQPFRHLPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGQGRRHWRVGDKTPLKQHCPH
PDLLQVEPFEAIIDEQMEPGDMLYIPPPASPMKVMRWRTR

Sequences:

>Translated_200_residues
MEQAMDYQLELDWNDFLQRYWQKRPVIIKRAFRDFVDPLSPDELAGLAMEAEVDSRLVSHDDGDWQLSHGPFTSDDHLGD
HNWSLLVQAVDHWHEPSAALMQPFRHLPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGQGRRHWRVGDKTPLKQHCPH
PDLLQVEPFEAIIDEQMEPGDMLYIPPPASPMKVMRWRTR
>Mature_200_residues
MEQAMDYQLELDWNDFLQRYWQKRPVIIKRAFRDFVDPLSPDELAGLAMEAEVDSRLVSHDDGDWQLSHGPFTSDDHLGD
HNWSLLVQAVDHWHEPSAALMQPFRHLPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGQGRRHWRVGDKTPLKQHCPH
PDLLQVEPFEAIIDEQMEPGDMLYIPPPASPMKVMRWRTR

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=183, Percent_Identity=80.8743169398907, Blast_Score=321, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 23310; Mature: 23310

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQAMDYQLELDWNDFLQRYWQKRPVIIKRAFRDFVDPLSPDELAGLAMEAEVDSRLVSH
CCCCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHCEEEEHHHHHHHHCC
DDGDWQLSHGPFTSDDHLGDHNWSLLVQAVDHWHEPSAALMQPFRHLPDWRIDDLMISFS
CCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE
VPGGGVGPHLDQYDVFIIQGQGRRHWRVGDKTPLKQHCPHPDLLQVEPFEAIIDEQMEPG
CCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHCCCCCCEEECHHHHHHCCCCCCC
DMLYIPPPASPMKVMRWRTR
CEEEECCCCCHHHHHHCCCC
>Mature Secondary Structure
MEQAMDYQLELDWNDFLQRYWQKRPVIIKRAFRDFVDPLSPDELAGLAMEAEVDSRLVSH
CCCCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHCEEEEHHHHHHHHCC
DDGDWQLSHGPFTSDDHLGDHNWSLLVQAVDHWHEPSAALMQPFRHLPDWRIDDLMISFS
CCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE
VPGGGVGPHLDQYDVFIIQGQGRRHWRVGDKTPLKQHCPHPDLLQVEPFEAIIDEQMEPG
CCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHCCCCCCEEECHHHHHHCCCCCCC
DMLYIPPPASPMKVMRWRTR
CEEEECCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]