| Definition | Sodalis glossinidius str. 'morsitans', complete genome. |
|---|---|
| Accession | NC_007712 |
| Length | 4,171,146 |
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The map label for this gene is ymfN [H]
Identifier: 85058702
GI number: 85058702
Start: 1209355
End: 1211103
Strand: Reverse
Name: ymfN [H]
Synonym: SG0724
Alternate gene names: 85058702
Gene position: 1211103-1209355 (Counterclockwise)
Preceding gene: 85058703
Following gene: 85058701
Centisome position: 29.04
GC content: 50.77
Gene sequence:
>1749_bases ATGACAAAGAAAAAAAACCGGACGAACTCGACGAGTTCTTCGCTCACTGATTTGACCACCCACTATGCCACTCAAGTTGT TTCCGGCGTGGAGATTGCCGGGCCTGATATTCGTCATGCCTGTCAACGTCACTTGCGGGATTTATCGACGGGTAATACGC GGGGTCTGTTGTGGGATGTCGGATCCGCACAGCGTGCCATCCGTTTTTTTTCCAGCGTATTGAAATTGAACGGCGGTATC TATGAAGGCAAGCCATTTAATTTACTCCCTTGGCAGTGTTTTATCGTTGGCACCCTTTTTGGCTGGCGAAACAACGAAGG ACAACGCCGTTTTCGGATGGCCTACGTTGAAGCCGGAAAAGGATCGGGAAAATCGCCACTGGCGGCGGGGATAGGGCTAT ATTGCCTGGTTGCTGATAATGAAGCGCGAGCCGAAGTCTATGCCGCTGCCACCAAAAAAGACCAGGCGATGATCCTGTTT CGTGACGCCGTCGCGATGGTAGACCAATCGCCAAAGCTGGCCGAACGTATCCAGAAATCCGGTGGGGCGGGTAAGGAATG GAATCTGGCTTTTTTACAGGCTCGTGCTTTTTTCCGGCCTATCAGTGCTGATGATGGGCAATCCGGCCCGCGTCCTCACT GTGCCTTGATTGACGAAATTCACGAACACAAAAGTAATCAGGTCGTTGAAATGATGCGGGCGGGCACAAAAGGCCGCCAA CAGGCCTTGATTTTCATGATCACCAATAGCGGCCATAACAAAACCAGTGTGTGTTACGACTATCACGAATACGGCCGTAA AGTGGCAGAGGGCAGCATTGAAGATTATAGCTTTTTCGCATTTATCTGTTCGCTGGACGAAGGCGATGACCCCTTTAAAG ATAGCGGTTGTTGGAAAAAAGCGAATCCCTCATTAGGGCATACGTTCAGCGAACGCTATCTACAGGAGCAAGTCACGCAA GCCCGTGGTATGCCAGCCAAAGAGAGCCTGGTTCGTCGTCTCAATTTCTGTCAGTGGGTCGATGCCGAGAATCCCTGGAT TAATAGTGATAGCTGGATGGCGTGTGAGAAAACCTCGCTGGATTTAGCGTCGCTGGCAAACTCACCCTGCTACGGTGGCC TGGATTTATCCGGCAAGCAGGATTTAACGGCGCTGGCGCTTTATTGGCCGGAAGAAAAAGTGGCTTATGTCGAGTTCTGG ACACCGAAAGACACCTTACTGGAACGTGCCAGGGTCGACAGAGTGCCTTACGATACCTGGTTGCGAGCGGGTTATCTTAA CGCCCCGCCAGGGAATGCGATTAATCTGGGTTTTGTTGCCCAACGGATAGCGGAATTATCCGCACGATATACCCTCAATC GTATTGCCTACGATGCGTATCATATTGATTATTTACGGCCAGAACTGGAAAACGAAGGGGTGAATACGCTATTAACGCCG CACGGACAAGGCTTCGGCAAATCGAAACAATCCGGACTTTGGATGCCGCGATCCATTGAATTGTTTGAGCAGCGTCTTCT CGGTGGCGAATTACGTATTGATTTCAACCCCTGCCTACGTTGGAACGCCGCGAATACGGTTATTGAAGAAGATAAAAACG GCAATCGTGTTTTTAGCAAACGCCGCAGCAACGGCCGTATTGACGGTGTGGTAGCACTGGCGATGGCAATCGGAGCCGCC GAGGTGCTTGAAGAAGAAACCGGCGATCTGGATGGCTTTTTAACAAATCCGATTATGGTAGGACTGTAG
Upstream 100 bases:
>100_bases AATCCAGCCGTTTCGATGCTGTCGGATGCGGATAAACGCTTTAAAAGCTATCTGGTTGAATTTGGCTTAACACCCGCCGC AAGAACCAAGGTGAGGACGC
Downstream 100 bases:
>100_bases TGAAAAAACATCAATCTCCCGGTAAAATTAAAAGCGCGGTGCTCAACTGGCTAGGGGTGCCACAGAATTTAACCGATACG CTGTCATCGTTTCATGACTA
Product: phage terminase large subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 582; Mature: 581
Protein sequence:
>582_residues MTKKKNRTNSTSSSLTDLTTHYATQVVSGVEIAGPDIRHACQRHLRDLSTGNTRGLLWDVGSAQRAIRFFSSVLKLNGGI YEGKPFNLLPWQCFIVGTLFGWRNNEGQRRFRMAYVEAGKGSGKSPLAAGIGLYCLVADNEARAEVYAAATKKDQAMILF RDAVAMVDQSPKLAERIQKSGGAGKEWNLAFLQARAFFRPISADDGQSGPRPHCALIDEIHEHKSNQVVEMMRAGTKGRQ QALIFMITNSGHNKTSVCYDYHEYGRKVAEGSIEDYSFFAFICSLDEGDDPFKDSGCWKKANPSLGHTFSERYLQEQVTQ ARGMPAKESLVRRLNFCQWVDAENPWINSDSWMACEKTSLDLASLANSPCYGGLDLSGKQDLTALALYWPEEKVAYVEFW TPKDTLLERARVDRVPYDTWLRAGYLNAPPGNAINLGFVAQRIAELSARYTLNRIAYDAYHIDYLRPELENEGVNTLLTP HGQGFGKSKQSGLWMPRSIELFEQRLLGGELRIDFNPCLRWNAANTVIEEDKNGNRVFSKRRSNGRIDGVVALAMAIGAA EVLEEETGDLDGFLTNPIMVGL
Sequences:
>Translated_582_residues MTKKKNRTNSTSSSLTDLTTHYATQVVSGVEIAGPDIRHACQRHLRDLSTGNTRGLLWDVGSAQRAIRFFSSVLKLNGGI YEGKPFNLLPWQCFIVGTLFGWRNNEGQRRFRMAYVEAGKGSGKSPLAAGIGLYCLVADNEARAEVYAAATKKDQAMILF RDAVAMVDQSPKLAERIQKSGGAGKEWNLAFLQARAFFRPISADDGQSGPRPHCALIDEIHEHKSNQVVEMMRAGTKGRQ QALIFMITNSGHNKTSVCYDYHEYGRKVAEGSIEDYSFFAFICSLDEGDDPFKDSGCWKKANPSLGHTFSERYLQEQVTQ ARGMPAKESLVRRLNFCQWVDAENPWINSDSWMACEKTSLDLASLANSPCYGGLDLSGKQDLTALALYWPEEKVAYVEFW TPKDTLLERARVDRVPYDTWLRAGYLNAPPGNAINLGFVAQRIAELSARYTLNRIAYDAYHIDYLRPELENEGVNTLLTP HGQGFGKSKQSGLWMPRSIELFEQRLLGGELRIDFNPCLRWNAANTVIEEDKNGNRVFSKRRSNGRIDGVVALAMAIGAA EVLEEETGDLDGFLTNPIMVGL >Mature_581_residues TKKKNRTNSTSSSLTDLTTHYATQVVSGVEIAGPDIRHACQRHLRDLSTGNTRGLLWDVGSAQRAIRFFSSVLKLNGGIY EGKPFNLLPWQCFIVGTLFGWRNNEGQRRFRMAYVEAGKGSGKSPLAAGIGLYCLVADNEARAEVYAAATKKDQAMILFR DAVAMVDQSPKLAERIQKSGGAGKEWNLAFLQARAFFRPISADDGQSGPRPHCALIDEIHEHKSNQVVEMMRAGTKGRQQ ALIFMITNSGHNKTSVCYDYHEYGRKVAEGSIEDYSFFAFICSLDEGDDPFKDSGCWKKANPSLGHTFSERYLQEQVTQA RGMPAKESLVRRLNFCQWVDAENPWINSDSWMACEKTSLDLASLANSPCYGGLDLSGKQDLTALALYWPEEKVAYVEFWT PKDTLLERARVDRVPYDTWLRAGYLNAPPGNAINLGFVAQRIAELSARYTLNRIAYDAYHIDYLRPELENEGVNTLLTPH GQGFGKSKQSGLWMPRSIELFEQRLLGGELRIDFNPCLRWNAANTVIEEDKNGNRVFSKRRSNGRIDGVVALAMAIGAAE VLEEETGDLDGFLTNPIMVGL
Specific function: Unknown
COG id: COG4626
COG function: function code R; Phage terminase-like protein, large subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage terminase family [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000524 - InterPro: IPR005021 - InterPro: IPR011991 [H]
Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]
EC number: NA
Molecular weight: Translated: 64915; Mature: 64784
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKKKNRTNSTSSSLTDLTTHYATQVVSGVEIAGPDIRHACQRHLRDLSTGNTRGLLWDV CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEEC GSAQRAIRFFSSVLKLNGGIYEGKPFNLLPWQCFIVGTLFGWRNNEGQRRFRMAYVEAGK CHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCC GSGKSPLAAGIGLYCLVADNEARAEVYAAATKKDQAMILFRDAVAMVDQSPKLAERIQKS CCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCEEEEEHHHHHHHCCCHHHHHHHHHC GGAGKEWNLAFLQARAFFRPISADDGQSGPRPHCALIDEIHEHKSNQVVEMMRAGTKGRQ CCCCCCCCHHHEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCC QALIFMITNSGHNKTSVCYDYHEYGRKVAEGSIEDYSFFAFICSLDEGDDPFKDSGCWKK EEEEEEEECCCCCCCEEEECHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC ANPSLGHTFSERYLQEQVTQARGMPAKESLVRRLNFCQWVDAENPWINSDSWMACEKTSL CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCEEECCCCC DLASLANSPCYGGLDLSGKQDLTALALYWPEEKVAYVEFWTPKDTLLERARVDRVPYDTW HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHCCCCHHHH LRAGYLNAPPGNAINLGFVAQRIAELSARYTLNRIAYDAYHIDYLRPELENEGVNTLLTP HHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHEEHHEEHHHHCCCCCCCCCCEEECC HGQGFGKSKQSGLWMPRSIELFEQRLLGGELRIDFNPCLRWNAANTVIEEDKNGNRVFSK CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEECCCCCCEECCCCCCHHHHH RRSNGRIDGVVALAMAIGAAEVLEEETGDLDGFLTNPIMVGL HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEECC >Mature Secondary Structure TKKKNRTNSTSSSLTDLTTHYATQVVSGVEIAGPDIRHACQRHLRDLSTGNTRGLLWDV CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEEC GSAQRAIRFFSSVLKLNGGIYEGKPFNLLPWQCFIVGTLFGWRNNEGQRRFRMAYVEAGK CHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCC GSGKSPLAAGIGLYCLVADNEARAEVYAAATKKDQAMILFRDAVAMVDQSPKLAERIQKS CCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCEEEEEHHHHHHHCCCHHHHHHHHHC GGAGKEWNLAFLQARAFFRPISADDGQSGPRPHCALIDEIHEHKSNQVVEMMRAGTKGRQ CCCCCCCCHHHEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCC QALIFMITNSGHNKTSVCYDYHEYGRKVAEGSIEDYSFFAFICSLDEGDDPFKDSGCWKK EEEEEEEECCCCCCCEEEECHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC ANPSLGHTFSERYLQEQVTQARGMPAKESLVRRLNFCQWVDAENPWINSDSWMACEKTSL CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCEEECCCCC DLASLANSPCYGGLDLSGKQDLTALALYWPEEKVAYVEFWTPKDTLLERARVDRVPYDTW HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHCCCCHHHH LRAGYLNAPPGNAINLGFVAQRIAELSARYTLNRIAYDAYHIDYLRPELENEGVNTLLTP HHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHEEHHEEHHHHCCCCCCCCCCEEECC HGQGFGKSKQSGLWMPRSIELFEQRLLGGELRIDFNPCLRWNAANTVIEEDKNGNRVFSK CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEECCCCCCEECCCCCCHHHHH RRSNGRIDGVVALAMAIGAAEVLEEETGDLDGFLTNPIMVGL HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]