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The map label for this gene is rdgC

Identifier: 85058615

GI number: 85058615

Start: 1090891

End: 1091808

Strand: Reverse

Name: rdgC

Synonym: SG0637

Alternate gene names: 85058615

Gene position: 1091808-1090891 (Counterclockwise)

Preceding gene: 85058620

Following gene: 85058609

Centisome position: 26.18

GC content: 54.79

Gene sequence:

>918_bases
ATGTTGTGGTTTAAGAATGTCATGATTTACCGTTTGAACCGGCCAATCGAGCTGTCGGTTGAGCAAATCGAACAGCAGTT
GTCCGCCTTCGCCTTCACTCCCTGCGGTAGTCAGGATATGGCGAAATCCGGCTGGGTTCCCCCAATGGGCGCCAAAAGCG
ATGCGCTGACCCATTCGATACCGGGGCATGTCCTGCTTTGCCTGCGCAAAGAAGAAAAGATTCTTCCGTCCTCGGTTGTC
AAGCAGGAGCTCGAGGGCAAAATCAGCAAGCTGGAAAATGACCAAAGCCGTAAACTGCGTAAAACTGATAAAGACGCGCT
TAAAGATGAGTTGTTGCACCAATTAATGCCCCGCGCCTTCAGCCGTTTTGGCCAGACGCTGCTGTGGCTGGATTTGGCTA
ACGATCTGGTGCTCGTTGACGCCGGTAGCGCTAGAAAGGCGGAAGATTGCCTGGCGATGCTGCGAAAATCAATCGGCTCG
CTGCCGGTGGTACCGTTGACCATGGAAAAACCGATAGAGATGACCCTGACCGAATGGGTACGCAGCGGAGAGCCCGCCGC
CGGTTTCGCCATTCAGGATGAAGCTGAATTGAAAGTACTGTTGGAAGAAGGCGGCATCTTGCGCTGTAAAAAACAGGATT
TATCTAGCGATGAAATCGCGGTGCATATAGAGGCGGGCAAACTGGTGACCAAGCTGGCGCTGGATTGGCGTGAGCGGGTG
CAATTTCTGCTTGGCGACGATGGGACGGTCAAGCGCTTGAAGTTCTCCGACACGTTGCGCGAGCAAAATGATGATATCGA
CCGCGAGGATTTCGCCGCGCGTTTCGACGCCGATTTCCTATTAATGACCGGTGAACTGACGGGCCTCATCGCCGAGCTGA
TTGCAGGGCTGGGCGGCGAGGCGCCGCGGCAGGGCTAA

Upstream 100 bases:

>100_bases
CGCTTTTTCCTAGGGTTAGAGCCAGCAATTCGTTATTATGCGCGCTGCGTTTGTTGGCAAATCGCGCCAGTTGCGGTGCC
TCAGGTCAGGGATATCTCAT

Downstream 100 bases:

>100_bases
GCGGTAACGCGTCGCCAGGCGACAGCACCGCGAGGGCGCTCCGGCCCCGCCCATGGCTTTCAGGGCGAGTGGCTGAGATA
TTTGCACAGATAGCTGCTGG

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLWFKNVMIYRLNRPIELSVEQIEQQLSAFAFTPCGSQDMAKSGWVPPMGAKSDALTHSIPGHVLLCLRKEEKILPSSVV
KQELEGKISKLENDQSRKLRKTDKDALKDELLHQLMPRAFSRFGQTLLWLDLANDLVLVDAGSARKAEDCLAMLRKSIGS
LPVVPLTMEKPIEMTLTEWVRSGEPAAGFAIQDEAELKVLLEEGGILRCKKQDLSSDEIAVHIEAGKLVTKLALDWRERV
QFLLGDDGTVKRLKFSDTLREQNDDIDREDFAARFDADFLLMTGELTGLIAELIAGLGGEAPRQG

Sequences:

>Translated_305_residues
MLWFKNVMIYRLNRPIELSVEQIEQQLSAFAFTPCGSQDMAKSGWVPPMGAKSDALTHSIPGHVLLCLRKEEKILPSSVV
KQELEGKISKLENDQSRKLRKTDKDALKDELLHQLMPRAFSRFGQTLLWLDLANDLVLVDAGSARKAEDCLAMLRKSIGS
LPVVPLTMEKPIEMTLTEWVRSGEPAAGFAIQDEAELKVLLEEGGILRCKKQDLSSDEIAVHIEAGKLVTKLALDWRERV
QFLLGDDGTVKRLKFSDTLREQNDDIDREDFAARFDADFLLMTGELTGLIAELIAGLGGEAPRQG
>Mature_305_residues
MLWFKNVMIYRLNRPIELSVEQIEQQLSAFAFTPCGSQDMAKSGWVPPMGAKSDALTHSIPGHVLLCLRKEEKILPSSVV
KQELEGKISKLENDQSRKLRKTDKDALKDELLHQLMPRAFSRFGQTLLWLDLANDLVLVDAGSARKAEDCLAMLRKSIGS
LPVVPLTMEKPIEMTLTEWVRSGEPAAGFAIQDEAELKVLLEEGGILRCKKQDLSSDEIAVHIEAGKLVTKLALDWRERV
QFLLGDDGTVKRLKFSDTLREQNDDIDREDFAARFDADFLLMTGELTGLIAELIAGLGGEAPRQG

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=303, Percent_Identity=69.6369636963696, Blast_Score=455, Evalue=1e-129,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_SODGM (Q2NVB3)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_454317.1
- ProteinModelPortal:   Q2NVB3
- SMR:   Q2NVB3
- STRING:   Q2NVB3
- GeneID:   3868456
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG0637
- NMPDR:   fig|343509.6.peg.1409
- eggNOG:   COG2974
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- PhylomeDB:   Q2NVB3
- ProtClustDB:   PRK00321
- BioCyc:   SGLO343509:SG0637-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34042; Mature: 34042

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWFKNVMIYRLNRPIELSVEQIEQQLSAFAFTPCGSQDMAKSGWVPPMGAKSDALTHSI
CCEECCEEEEECCCCCEECHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCCCCCHHHCCC
PGHVLLCLRKEEKILPSSVVKQELEGKISKLENDQSRKLRKTDKDALKDELLHQLMPRAF
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRFGQTLLWLDLANDLVLVDAGSARKAEDCLAMLRKSIGSLPVVPLTMEKPIEMTLTEWV
HHHCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
RSGEPAAGFAIQDEAELKVLLEEGGILRCKKQDLSSDEIAVHIEAGKLVTKLALDWRERV
HCCCCCCCEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHH
QFLLGDDGTVKRLKFSDTLREQNDDIDREDFAARFDADFLLMTGELTGLIAELIAGLGGE
HHHCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCC
APRQG
CCCCC
>Mature Secondary Structure
MLWFKNVMIYRLNRPIELSVEQIEQQLSAFAFTPCGSQDMAKSGWVPPMGAKSDALTHSI
CCEECCEEEEECCCCCEECHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCCCCCHHHCCC
PGHVLLCLRKEEKILPSSVVKQELEGKISKLENDQSRKLRKTDKDALKDELLHQLMPRAF
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRFGQTLLWLDLANDLVLVDAGSARKAEDCLAMLRKSIGSLPVVPLTMEKPIEMTLTEWV
HHHCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
RSGEPAAGFAIQDEAELKVLLEEGGILRCKKQDLSSDEIAVHIEAGKLVTKLALDWRERV
HCCCCCCCEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHH
QFLLGDDGTVKRLKFSDTLREQNDDIDREDFAARFDADFLLMTGELTGLIAELIAGLGGE
HHHCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCC
APRQG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA