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The map label for this gene is tdcF [C]

Identifier: 85058600

GI number: 85058600

Start: 1060218

End: 1060616

Strand: Reverse

Name: tdcF [C]

Synonym: SG0622

Alternate gene names: 85058600

Gene position: 1060616-1060218 (Counterclockwise)

Preceding gene: 85058603

Following gene: 85058599

Centisome position: 25.43

GC content: 57.39

Gene sequence:

>399_bases
ATGAGTATCAAACGTTATGGCATTGAAGGTGGCACCGGCACGGGCGGGCAACATCTGCCGTTCTCCAGTGCGGTAGAAGC
CGGCGGCTGGCTGTACGTATCCGGTCAGACGCCGATGCTCCATGGAGAAGTGGTGGAAGGCGGTATCGTCGAACAGTCGC
GTCTGGCCATCCAGAACTGCCTCAATATTATGAAGCAGGCGGGCTACGGCCTGGAGCATGTGGTGCACGTCAAAGTTTTT
CTGACCGATGCCCGTTACTTCCAATCGTTCAATAAAGTCTTCCGCGAGGTCTTTGGCGAACACCCTCCCGCCCGCGTGTG
TTGCTTGGCGGACCTGGTGGTGGACTGCAAGGTGGAAGTGGACGTCACCTGTTATAACGCGGCGCGGGTAAACGGCTAA

Upstream 100 bases:

>100_bases
ATACACCTTGCCAAATCTATTCGTAACCATGCTAACTAAATTTCAAGATACAAGGGTGTAATTGCGCCTCTAGCGCAGAA
TTTCAGGAGAAAAAAGAACT

Downstream 100 bases:

>100_bases
GGAAACCGGAATGACCCACCGGCGACGGCGGGTATGCCTGGGATCAGGCCACAGTTTGCTTATGGCCAATGCCTTTACTA
CGGCGAAGCAGCACCGTCAC

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSIKRYGIEGGTGTGGQHLPFSSAVEAGGWLYVSGQTPMLHGEVVEGGIVEQSRLAIQNCLNIMKQAGYGLEHVVHVKVF
LTDARYFQSFNKVFREVFGEHPPARVCCLADLVVDCKVEVDVTCYNAARVNG

Sequences:

>Translated_132_residues
MSIKRYGIEGGTGTGGQHLPFSSAVEAGGWLYVSGQTPMLHGEVVEGGIVEQSRLAIQNCLNIMKQAGYGLEHVVHVKVF
LTDARYFQSFNKVFREVFGEHPPARVCCLADLVVDCKVEVDVTCYNAARVNG
>Mature_131_residues
SIKRYGIEGGTGTGGQHLPFSSAVEAGGWLYVSGQTPMLHGEVVEGGIVEQSRLAIQNCLNIMKQAGYGLEHVVHVKVFL
TDARYFQSFNKVFREVFGEHPPARVCCLADLVVDCKVEVDVTCYNAARVNG

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87082213, Length=115, Percent_Identity=30.4347826086957, Blast_Score=63, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=125, Percent_Identity=34.4, Blast_Score=77, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6320899, Length=84, Percent_Identity=34.5238095238095, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14376; Mature: 14244

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKRYGIEGGTGTGGQHLPFSSAVEAGGWLYVSGQTPMLHGEVVEGGIVEQSRLAIQNC
CCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCEEECEECCCCCCHHHHHHHHHH
LNIMKQAGYGLEHVVHVKVFLTDARYFQSFNKVFREVFGEHPPARVCCLADLVVDCKVEV
HHHHHHCCCCCHHEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEE
DVTCYNAARVNG
EEEEECEEECCC
>Mature Secondary Structure 
SIKRYGIEGGTGTGGQHLPFSSAVEAGGWLYVSGQTPMLHGEVVEGGIVEQSRLAIQNC
CCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCEEECEECCCCCCHHHHHHHHHH
LNIMKQAGYGLEHVVHVKVFLTDARYFQSFNKVFREVFGEHPPARVCCLADLVVDCKVEV
HHHHHHCCCCCHHEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEE
DVTCYNAARVNG
EEEEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]