Click here to switch to the map view.

The map label for this gene is kdsD [H]

Identifier: 85058182

GI number: 85058182

Start: 382545

End: 383531

Strand: Reverse

Name: kdsD [H]

Synonym: SG0204

Alternate gene names: 85058182

Gene position: 383531-382545 (Counterclockwise)

Preceding gene: 85058190

Following gene: 85058181

Centisome position: 9.19

GC content: 60.69

Gene sequence:

>987_bases
ATGTCGCAGAATACATTAGCGCCGGCCTTTGATTTTATCGCCGCCGGCAAGGAAGTTCTCGCTATTGAGCGAGCGGGTCT
GGCGCAGCTGGATCAATATATTAACGACGATTTCCGCCGCGCCTGCGAAGCGCTGTTTCGCTGTGCCGGCAAAGTGGTGG
TGATGGGCATGGGCAAATCCGGCCATATCGGCCGCAAGCTGGCCGCCACTTTCGCCAGTACCGGCACGCCGGCGTTTTTC
GTCCATCCCGGCGAGGCCAGCCATGGTGACCTGGGTATGGTGTCGCCGCAGGATATCGTTATCGCGCTGTCGAATTCCGG
CGAATCCCACGAGATCCTGGCGCTGATTCCCGTGCTTAAACGTCTGCACATCCCCCTCATCTGCCTGACCGGCAAACCGG
AAAGTACTATGGGGAAAGCGGCGGAAATCCATTTGTGCGTGCATGTGCCGGAAGAAGCCTGCCCGCTGGGCCTGGCGCCG
ACCGCCAGCACCACCGCCGCGCTGGTCATGGGCGACGCGCTGGCGGTGGCGCTCCTGCGGGCACGGGGCTTTACCGCCGA
GGATTTCGCCTTGTCCCATCCCGGCGGCGCATTAGGACGCAAACTGCTGCTGCGCGTAAGCGATATCATGCACAGCGGCG
ACGAAATGCCGCTGACCGCCCGCACGGCCTCGCTGCGCGACGCGCTGCTGGAGATTACCCGCAAAAACCTGGGCATGACG
GTGATTTGCGATGCACAAAATGTCATTGTCGGGATTTTTACCGATGGCGATCTGCGGCGGGTGTTTGATATGGGCATTGA
CCTCAAAGAGGCGCGTATCGCCGATGTCATGACGCCGGGGGGCGTACGCGTCGCGCCCGATACGCTGGCGGTGGAAGCGC
TGAATCTCATACAGGCGCGCAACATTACTTCGCTAATGGTGGCGCAGGACGACCATCTGTTAGGCGTAGTGCATATGCAT
GATATGCTACGCGCCGGCGTGATATAA

Upstream 100 bases:

>100_bases
TTGGGTCATGCTGGCGGCGAGCGTTATCCTCGCCGCCCTGTGCCTGCGCAAACGGCGCCGGATAAATCGCCTGTCGGGGG
CCTTACTCAGGATATGTTTT

Downstream 100 bases:

>100_bases
CAAGGAATAACGTCATGCAAGAGACCCCCACCGTCGAGACATGCTACGGACCGGTAGCGCAGCAGGTGCTGGAAAGCGCC
CGGACTATTCGTCTGCTGAT

Product: D-arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSQNTLAPAFDFIAAGKEVLAIERAGLAQLDQYINDDFRRACEALFRCAGKVVVMGMGKSGHIGRKLAATFASTGTPAFF
VHPGEASHGDLGMVSPQDIVIALSNSGESHEILALIPVLKRLHIPLICLTGKPESTMGKAAEIHLCVHVPEEACPLGLAP
TASTTAALVMGDALAVALLRARGFTAEDFALSHPGGALGRKLLLRVSDIMHSGDEMPLTARTASLRDALLEITRKNLGMT
VICDAQNVIVGIFTDGDLRRVFDMGIDLKEARIADVMTPGGVRVAPDTLAVEALNLIQARNITSLMVAQDDHLLGVVHMH
DMLRAGVI

Sequences:

>Translated_328_residues
MSQNTLAPAFDFIAAGKEVLAIERAGLAQLDQYINDDFRRACEALFRCAGKVVVMGMGKSGHIGRKLAATFASTGTPAFF
VHPGEASHGDLGMVSPQDIVIALSNSGESHEILALIPVLKRLHIPLICLTGKPESTMGKAAEIHLCVHVPEEACPLGLAP
TASTTAALVMGDALAVALLRARGFTAEDFALSHPGGALGRKLLLRVSDIMHSGDEMPLTARTASLRDALLEITRKNLGMT
VICDAQNVIVGIFTDGDLRRVFDMGIDLKEARIADVMTPGGVRVAPDTLAVEALNLIQARNITSLMVAQDDHLLGVVHMH
DMLRAGVI
>Mature_327_residues
SQNTLAPAFDFIAAGKEVLAIERAGLAQLDQYINDDFRRACEALFRCAGKVVVMGMGKSGHIGRKLAATFASTGTPAFFV
HPGEASHGDLGMVSPQDIVIALSNSGESHEILALIPVLKRLHIPLICLTGKPESTMGKAAEIHLCVHVPEEACPLGLAPT
ASTTAALVMGDALAVALLRARGFTAEDFALSHPGGALGRKLLLRVSDIMHSGDEMPLTARTASLRDALLEITRKNLGMTV
ICDAQNVIVGIFTDGDLRRVFDMGIDLKEARIADVMTPGGVRVAPDTLAVEALNLIQARNITSLMVAQDDHLLGVVHMHD
MLRAGVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=328, Percent_Identity=78.0487804878049, Blast_Score=533, Evalue=1e-153,
Organism=Escherichia coli, GI87082151, Length=318, Percent_Identity=46.8553459119497, Blast_Score=287, Evalue=8e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34778; Mature: 34647

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNTLAPAFDFIAAGKEVLAIERAGLAQLDQYINDDFRRACEALFRCAGKVVVMGMGKS
CCCCCCCHHHHHHHCCCCEEEEHHCCHHHHHHHHCHHHHHHHHHHHHCCCCEEEEECCCC
GHIGRKLAATFASTGTPAFFVHPGEASHGDLGMVSPQDIVIALSNSGESHEILALIPVLK
CCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
RLHIPLICLTGKPESTMGKAAEIHLCVHVPEEACPLGLAPTASTTAALVMGDALAVALLR
HCCCCEEEEECCCCCCCCCCEEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
ARGFTAEDFALSHPGGALGRKLLLRVSDIMHSGDEMPLTARTASLRDALLEITRKNLGMT
HCCCCCHHCEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCEE
VICDAQNVIVGIFTDGDLRRVFDMGIDLKEARIADVMTPGGVRVAPDTLAVEALNLIQAR
EEEECCCEEEEEEECCHHHHHHHCCCCHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHC
NITSLMVAQDDHLLGVVHMHDMLRAGVI
CCEEEEEECCCCEEEHHHHHHHHHHCCC
>Mature Secondary Structure 
SQNTLAPAFDFIAAGKEVLAIERAGLAQLDQYINDDFRRACEALFRCAGKVVVMGMGKS
CCCCCCHHHHHHHCCCCEEEEHHCCHHHHHHHHCHHHHHHHHHHHHCCCCEEEEECCCC
GHIGRKLAATFASTGTPAFFVHPGEASHGDLGMVSPQDIVIALSNSGESHEILALIPVLK
CCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
RLHIPLICLTGKPESTMGKAAEIHLCVHVPEEACPLGLAPTASTTAALVMGDALAVALLR
HCCCCEEEEECCCCCCCCCCEEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
ARGFTAEDFALSHPGGALGRKLLLRVSDIMHSGDEMPLTARTASLRDALLEITRKNLGMT
HCCCCCHHCEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCEE
VICDAQNVIVGIFTDGDLRRVFDMGIDLKEARIADVMTPGGVRVAPDTLAVEALNLIQAR
EEEECCCEEEEEEECCHHHHHHHCCCCHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHC
NITSLMVAQDDHLLGVVHMHDMLRAGVI
CCEEEEEECCCCEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]