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The map label for this gene is rsd

Identifier: 85058115

GI number: 85058115

Start: 228901

End: 229338

Strand: Reverse

Name: rsd

Synonym: SG0137

Alternate gene names: 85058115

Gene position: 229338-228901 (Counterclockwise)

Preceding gene: 85058120

Following gene: 85058114

Centisome position: 5.5

GC content: 51.6

Gene sequence:

>438_bases
ATGCTAAACCAGTTGGAAAACCTGGCGAAATGCGTTGGTGGCAATAATGAACTTATTGATCAATGGTTGCAGGCCCGCAA
AGGACTTTTAGTGGCCTACTACCATTTGATCGGCCTCAAGCCCAACAAAGAAAAGCATACTCCGCTGGACGAAGAAGCGC
TGGACGCCTTTTGCCATCAGTTGGTGGATTATCTCTCCGCCGGGCATTTTCTCGTTTACGATAGTATCGTGCCTGAGGGC
GAGAGCTCGTCCACGCTGACCTACAGCGGTCTGCAGGAAAATACGCAGCAAATCATGGCGCTCTACGACAGCCATCTTGA
AAACGCCATTGACCACGACAACTATCTGTCATTCCAGGAAGCGTTGTCGGGCGTGGGGGAAGCGCTGGCGACGCGTTTCG
TCCTTGAGGATAAACTGATTCAGCAAGCGATGGAGTAG

Upstream 100 bases:

>100_bases
GCACTACCTCTTATTCACTGGCAAGCTAGAAAACCTTAACGTTTTGCTCGCTTTTATTTATCAGTTACGCAGCGTTATTT
TTATCACTTCGGAGTCAATC

Downstream 100 bases:

>100_bases
AGTGTGCAAGCCGCATCGACACTCCCCGCCGCCAACAGCGCCGATATTGCCCGGCCGGCCTGAGTCATCCCGGTAGCGGT
CGCGAACAGGTGGAAGCGGT

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MLNQLENLAKCVGGNNELIDQWLQARKGLLVAYYHLIGLKPNKEKHTPLDEEALDAFCHQLVDYLSAGHFLVYDSIVPEG
ESSSTLTYSGLQENTQQIMALYDSHLENAIDHDNYLSFQEALSGVGEALATRFVLEDKLIQQAME

Sequences:

>Translated_145_residues
MLNQLENLAKCVGGNNELIDQWLQARKGLLVAYYHLIGLKPNKEKHTPLDEEALDAFCHQLVDYLSAGHFLVYDSIVPEG
ESSSTLTYSGLQENTQQIMALYDSHLENAIDHDNYLSFQEALSGVGEALATRFVLEDKLIQQAME
>Mature_145_residues
MLNQLENLAKCVGGNNELIDQWLQARKGLLVAYYHLIGLKPNKEKHTPLDEEALDAFCHQLVDYLSAGHFLVYDSIVPEG
ESSSTLTYSGLQENTQQIMALYDSHLENAIDHDNYLSFQEALSGVGEALATRFVLEDKLIQQAME

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family

Homologues:

Organism=Escherichia coli, GI1790428, Length=145, Percent_Identity=59.3103448275862, Blast_Score=172, Evalue=6e-45,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): RSD_SODGM (Q2NWR3)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_453817.1
- ProteinModelPortal:   Q2NWR3
- SMR:   Q2NWR3
- STRING:   Q2NWR3
- GeneID:   3867971
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG0137
- NMPDR:   fig|343509.6.peg.277
- eggNOG:   COG3160
- HOGENOM:   HBG416628
- OMA:   ENTAQIM
- PhylomeDB:   Q2NWR3
- ProtClustDB:   PRK11718
- BioCyc:   SGLO343509:SG0137-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01181
- InterPro:   IPR007448
- PIRSF:   PIRSF016548

Pfam domain/function: PF04353 Rsd_AlgQ

EC number: NA

Molecular weight: Translated: 16270; Mature: 16270

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQLENLAKCVGGNNELIDQWLQARKGLLVAYYHLIGLKPNKEKHTPLDEEALDAFCHQ
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVDYLSAGHFLVYDSIVPEGESSSTLTYSGLQENTQQIMALYDSHLENAIDHDNYLSFQE
HHHHHCCCCEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ALSGVGEALATRFVLEDKLIQQAME
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNQLENLAKCVGGNNELIDQWLQARKGLLVAYYHLIGLKPNKEKHTPLDEEALDAFCHQ
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVDYLSAGHFLVYDSIVPEGESSSTLTYSGLQENTQQIMALYDSHLENAIDHDNYLSFQE
HHHHHCCCCEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ALSGVGEALATRFVLEDKLIQQAME
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA