Click here to switch to the map view.

The map label for this gene is tnpA [H]

Identifier: 84625955

GI number: 84625955

Start: 4855527

End: 4856762

Strand: Reverse

Name: tnpA [H]

Synonym: XOO_4298

Alternate gene names: 84625955

Gene position: 4856762-4855527 (Counterclockwise)

Preceding gene: 84625956

Following gene: 84625954

Centisome position: 98.31

GC content: 63.19

Gene sequence:

>1236_bases
ATGACGGCCAAGGTGTTTGAAGCGGCGCTGGGGATCGGCGCGCCGTGGTCGGTAGGCGCGGTCGAGTTCGACGAAGCGAC
CAAGGTGTTGACGGTGCCGGTGGACTTCAAGCCGGGCACGAGGTTCAAGGTATCGGGCCAAAAGGGGCTGCATCCGGTTC
ATGACACCGTGGTCAAGACCTACCGGCACCTGAACTTTTTCCAGCACGAGTGCTACCTGAAGGTTCGCACACCGCGTGTG
AAGCTTGGGGACGGATCGGTTCGCCTGGTCGAGCCGGACTTCGCTGGGCGGTTGTCGGGCTTCACGCTGTTGTTCGAGGC
GCTGGTGCTGATGTTGTCGCAGCAGATGCCGTTCGCGGCCGTTGCGCGCATCGTGGGCGAGTCGGCGTACCGGTGCATGC
AGGTGTGCAACCGCTATGTCGAGATGGCCCTGGAGCAGGCCGACTTCAGCGACGTCACGTCGCTGGCCATCGACGAGACG
TCGCGCGCTCGCGGCCACGACTATGTGACCTTGGCTGCCGACGCCCAGGCGCGACGCGTGATCTTCGTGACTGAGGGGCG
GGACGCCAAAGCCGTGAAGGCGCTGGCTGCCGATCTGGCAGCTCATGGCTGCCCTCCCGAACAGATCACCTCGGTGAGCA
TCGACATGTCGCCCGGGTTCATCAAGGGCGTAAGCGACCAGTTGCCCAACGCGCAGATCACCTTCGACAAGTTCCACGTT
GTCGGACATGCGAACGCGGCCGTGGACAAAACCAGGCGCATCGAGCAGCGCACCGAGAAGTCCCTCAAGGGCATGCGCTG
GACGCTGCTCAAGGATGTCTTCAGCCTCAAACCGACGGCCGGCGCAGCATTGCACGGGCTGATCACGGCACCCAAGCTCA
CACGGACGGCCCGCGCGTGGCTCTACAAGGAGCAGTTGCGCGAGGCGCTTGACCGAAAGCAGATCAACGTGATGCGCGAG
ATGCTCAAGCACTGGTGCGTCTGCGTGATGCGATCCAAGGTCGAGGCGATGAAGGAAGTCGCAGCCCTCGTGCGCCGCCA
CATGGACGGCATCGTCGCCTGGGCGCAGACCCGTCAGACCAACGGCTTCCTTGAAGCCATCAATGGCCTGTTCCAGTCCG
CCAAGCGCAGAGCTCGCGGCTTCAAACGCCTGTCCACCATCAAGACCGTCATCTTCCTGATTGCCGGCAAGCTGGACTTC
CAAACGTTCAACCCGCATGCCCGGCAACCCACTTGA

Upstream 100 bases:

>100_bases
TGCAACGCCAATTTCCATGCCACAGGCGCGCATTATCTGGCTCTCTGAAAATTTGAGTGGGTAGGATTTCGGGTGGTTTA
CCACTGACGCGGGGATTGGG

Downstream 100 bases:

>100_bases
AATTCAAGAGAGCCCATTATCTCAATGCCGACATCACCGCCTTCATGCAATTTCTTGAAGGCGATTTGTTCACTGATTTT
CCGGAACTGCGCTTCATCAT

Product: ISXoo13 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MTAKVFEAALGIGAPWSVGAVEFDEATKVLTVPVDFKPGTRFKVSGQKGLHPVHDTVVKTYRHLNFFQHECYLKVRTPRV
KLGDGSVRLVEPDFAGRLSGFTLLFEALVLMLSQQMPFAAVARIVGESAYRCMQVCNRYVEMALEQADFSDVTSLAIDET
SRARGHDYVTLAADAQARRVIFVTEGRDAKAVKALAADLAAHGCPPEQITSVSIDMSPGFIKGVSDQLPNAQITFDKFHV
VGHANAAVDKTRRIEQRTEKSLKGMRWTLLKDVFSLKPTAGAALHGLITAPKLTRTARAWLYKEQLREALDRKQINVMRE
MLKHWCVCVMRSKVEAMKEVAALVRRHMDGIVAWAQTRQTNGFLEAINGLFQSAKRRARGFKRLSTIKTVIFLIAGKLDF
QTFNPHARQPT

Sequences:

>Translated_411_residues
MTAKVFEAALGIGAPWSVGAVEFDEATKVLTVPVDFKPGTRFKVSGQKGLHPVHDTVVKTYRHLNFFQHECYLKVRTPRV
KLGDGSVRLVEPDFAGRLSGFTLLFEALVLMLSQQMPFAAVARIVGESAYRCMQVCNRYVEMALEQADFSDVTSLAIDET
SRARGHDYVTLAADAQARRVIFVTEGRDAKAVKALAADLAAHGCPPEQITSVSIDMSPGFIKGVSDQLPNAQITFDKFHV
VGHANAAVDKTRRIEQRTEKSLKGMRWTLLKDVFSLKPTAGAALHGLITAPKLTRTARAWLYKEQLREALDRKQINVMRE
MLKHWCVCVMRSKVEAMKEVAALVRRHMDGIVAWAQTRQTNGFLEAINGLFQSAKRRARGFKRLSTIKTVIFLIAGKLDF
QTFNPHARQPT
>Mature_410_residues
TAKVFEAALGIGAPWSVGAVEFDEATKVLTVPVDFKPGTRFKVSGQKGLHPVHDTVVKTYRHLNFFQHECYLKVRTPRVK
LGDGSVRLVEPDFAGRLSGFTLLFEALVLMLSQQMPFAAVARIVGESAYRCMQVCNRYVEMALEQADFSDVTSLAIDETS
RARGHDYVTLAADAQARRVIFVTEGRDAKAVKALAADLAAHGCPPEQITSVSIDMSPGFIKGVSDQLPNAQITFDKFHVV
GHANAAVDKTRRIEQRTEKSLKGMRWTLLKDVFSLKPTAGAALHGLITAPKLTRTARAWLYKEQLREALDRKQINVMREM
LKHWCVCVMRSKVEAMKEVAALVRRHMDGIVAWAQTRQTNGFLEAINGLFQSAKRRARGFKRLSTIKTVIFLIAGKLDFQ
TFNPHARQPT

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 45811; Mature: 45680

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAKVFEAALGIGAPWSVGAVEFDEATKVLTVPVDFKPGTRFKVSGQKGLHPVHDTVVKT
CCHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHH
YRHLNFFQHECYLKVRTPRVKLGDGSVRLVEPDFAGRLSGFTLLFEALVLMLSQQMPFAA
HHHHHHHHHEEEEEEECCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VARIVGESAYRCMQVCNRYVEMALEQADFSDVTSLAIDETSRARGHDYVTLAADAQARRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEE
IFVTEGRDAKAVKALAADLAAHGCPPEQITSVSIDMSPGFIKGVSDQLPNAQITFDKFHV
EEEECCCCHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCHHCCCHHCCCCCEEEEEEEEE
VGHANAAVDKTRRIEQRTEKSLKGMRWTLLKDVFSLKPTAGAALHGLITAPKLTRTARAW
EECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHH
LYKEQLREALDRKQINVMREMLKHWCVCVMRSKVEAMKEVAALVRRHMDGIVAWAQTRQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NGFLEAINGLFQSAKRRARGFKRLSTIKTVIFLIAGKLDFQTFNPHARQPT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TAKVFEAALGIGAPWSVGAVEFDEATKVLTVPVDFKPGTRFKVSGQKGLHPVHDTVVKT
CHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHH
YRHLNFFQHECYLKVRTPRVKLGDGSVRLVEPDFAGRLSGFTLLFEALVLMLSQQMPFAA
HHHHHHHHHEEEEEEECCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VARIVGESAYRCMQVCNRYVEMALEQADFSDVTSLAIDETSRARGHDYVTLAADAQARRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEE
IFVTEGRDAKAVKALAADLAAHGCPPEQITSVSIDMSPGFIKGVSDQLPNAQITFDKFHV
EEEECCCCHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCHHCCCHHCCCCCEEEEEEEEE
VGHANAAVDKTRRIEQRTEKSLKGMRWTLLKDVFSLKPTAGAALHGLITAPKLTRTARAW
EECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHH
LYKEQLREALDRKQINVMREMLKHWCVCVMRSKVEAMKEVAALVRRHMDGIVAWAQTRQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NGFLEAINGLFQSAKRRARGFKRLSTIKTVIFLIAGKLDFQTFNPHARQPT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]