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The map label for this gene is yncB [H]

Identifier: 84625922

GI number: 84625922

Start: 4820759

End: 4821787

Strand: Reverse

Name: yncB [H]

Synonym: XOO_4265

Alternate gene names: 84625922

Gene position: 4821787-4820759 (Counterclockwise)

Preceding gene: 84625923

Following gene: 84625921

Centisome position: 97.6

GC content: 63.75

Gene sequence:

>1029_bases
ATGACATCCCTTACCAACCGCCGCATCGTGCTGGCCTCGCGCCCGCAGGGTGAACCCAGCGCCGACAACTTCCGTATCGA
AGACATCGCCGTCCCGCCGACCGGCCACGATCAGATCCTGGTACGCAATCGCTTCCTGTCGCTGGACCCGTACATGCGCG
GACGCATGGACGACGGCCCGTCCTATGTCGCGCCGGTGGCCATCGACGCCCTCATGGAAGGCGGCACCGTTGGCGAAGTG
ATCGAATCCAATCACGCCGACTATCACCCTGGCGATCTGCTGGTACTGCCTGGTGGCTGGCAGACGCATAGCCTGCTGAC
CCCGAAAACACCATTACGCAAGTTGCCACAGGACGACGGTCTGCCGCCAAGCACCGCACTGGGCGTCTATGGCATGCCCG
GCTTCACCGCGTATGCAGGCCTGCATGAAATCGGCAAGCCACAATCCGGCGAAACGCTGGTAGTGGCTGCGGCCAGCGGC
CCGGTCGGCGCCACGGTGGCGCAGCTGGCACGCCTGCAAGGTCTGCGCGTGGTGGCCATTGCCGGTGGCGAAGAAAAAGT
GCGTTACCTGCGCGACACGCTGCGCGTGGATGTGGCACTGGATCACCGCGCAGACGATTTTGCAGAGCAGCTGCGCGCCG
CAACGCTGGACGGCATCGATATCTATTTCGAAAACGTCGGCGGCAAGGTGTTCGATGCGGTGTTGCCGCAGCTCAACGAC
TTCGCACGCATCCCGGTGTGCGGCGTGATCGCCACCTACAACAGCCGTGGGCAAGTGCTGCCTGGCCCGGACCGTCTGCC
CGAGTTCATAGGCCAGCTGTTGCGCAAGCGCCTCACCGTGCGTGGCTTCATCCAGCACGATGTCATCCGCCTGATGCCTG
CGTTTCTGCGCGAAATGGGCCAGTGGCTGCGCGAGGACAAGATCCAATACCGCGAGCACGTCCTGCACGGCCTGGACAGC
GCCCCGCAGGGCCTGGTCGATGTCTTGCGTGGTAAAAACTTCGGAAAGGCCGTCGTCGCCCTCGACTAA

Upstream 100 bases:

>100_bases
ATGTGTCCTAGACGCCTTTTACACCCCTCCCTCGCCCAGCCGCTCTGGCGGCTGGGCGTACCCGACCGTGCATGCGCGGC
CTCTTTGCGAGGAATTCCCC

Downstream 100 bases:

>100_bases
CCACATGCACTGCGCTCCGCGCACCGCCGCTCCTGCGATTCCCCATTCCCAAAGGAACACAATGACTGTCCCCACATTCG
GCCTCGGCACCTTTCGCCTT

Product: quinone oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTSLTNRRIVLASRPQGEPSADNFRIEDIAVPPTGHDQILVRNRFLSLDPYMRGRMDDGPSYVAPVAIDALMEGGTVGEV
IESNHADYHPGDLLVLPGGWQTHSLLTPKTPLRKLPQDDGLPPSTALGVYGMPGFTAYAGLHEIGKPQSGETLVVAAASG
PVGATVAQLARLQGLRVVAIAGGEEKVRYLRDTLRVDVALDHRADDFAEQLRAATLDGIDIYFENVGGKVFDAVLPQLND
FARIPVCGVIATYNSRGQVLPGPDRLPEFIGQLLRKRLTVRGFIQHDVIRLMPAFLREMGQWLREDKIQYREHVLHGLDS
APQGLVDVLRGKNFGKAVVALD

Sequences:

>Translated_342_residues
MTSLTNRRIVLASRPQGEPSADNFRIEDIAVPPTGHDQILVRNRFLSLDPYMRGRMDDGPSYVAPVAIDALMEGGTVGEV
IESNHADYHPGDLLVLPGGWQTHSLLTPKTPLRKLPQDDGLPPSTALGVYGMPGFTAYAGLHEIGKPQSGETLVVAAASG
PVGATVAQLARLQGLRVVAIAGGEEKVRYLRDTLRVDVALDHRADDFAEQLRAATLDGIDIYFENVGGKVFDAVLPQLND
FARIPVCGVIATYNSRGQVLPGPDRLPEFIGQLLRKRLTVRGFIQHDVIRLMPAFLREMGQWLREDKIQYREHVLHGLDS
APQGLVDVLRGKNFGKAVVALD
>Mature_341_residues
TSLTNRRIVLASRPQGEPSADNFRIEDIAVPPTGHDQILVRNRFLSLDPYMRGRMDDGPSYVAPVAIDALMEGGTVGEVI
ESNHADYHPGDLLVLPGGWQTHSLLTPKTPLRKLPQDDGLPPSTALGVYGMPGFTAYAGLHEIGKPQSGETLVVAAASGP
VGATVAQLARLQGLRVVAIAGGEEKVRYLRDTLRVDVALDHRADDFAEQLRAATLDGIDIYFENVGGKVFDAVLPQLNDF
ARIPVCGVIATYNSRGQVLPGPDRLPEFIGQLLRKRLTVRGFIQHDVIRLMPAFLREMGQWLREDKIQYREHVLHGLDSA
PQGLVDVLRGKNFGKAVVALD

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226246682, Length=347, Percent_Identity=34.5821325648415, Blast_Score=202, Evalue=3e-52,
Organism=Homo sapiens, GI226246680, Length=347, Percent_Identity=34.5821325648415, Blast_Score=202, Evalue=3e-52,
Organism=Homo sapiens, GI22748929, Length=347, Percent_Identity=34.5821325648415, Blast_Score=202, Evalue=3e-52,
Organism=Homo sapiens, GI226059159, Length=329, Percent_Identity=37.0820668693009, Blast_Score=201, Evalue=9e-52,
Organism=Homo sapiens, GI226059133, Length=329, Percent_Identity=37.0820668693009, Blast_Score=201, Evalue=9e-52,
Organism=Homo sapiens, GI226056130, Length=244, Percent_Identity=39.344262295082, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI28557745, Length=341, Percent_Identity=27.8592375366569, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI194239674, Length=259, Percent_Identity=27.7992277992278, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI13236495, Length=259, Percent_Identity=27.7992277992278, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI226510941, Length=337, Percent_Identity=56.0830860534125, Blast_Score=369, Evalue=1e-103,
Organism=Caenorhabditis elegans, GI133901712, Length=357, Percent_Identity=30.5322128851541, Blast_Score=159, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI133901710, Length=357, Percent_Identity=29.9719887955182, Blast_Score=158, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6323504, Length=287, Percent_Identity=27.8745644599303, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37300; Mature: 37169

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLTNRRIVLASRPQGEPSADNFRIEDIAVPPTGHDQILVRNRFLSLDPYMRGRMDDGP
CCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEECCEECCCHHHCCCCCCCC
SYVAPVAIDALMEGGTVGEVIESNHADYHPGDLLVLPGGWQTHSLLTPKTPLRKLPQDDG
CEEHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCC
LPPSTALGVYGMPGFTAYAGLHEIGKPQSGETLVVAAASGPVGATVAQLARLQGLRVVAI
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEE
AGGEEKVRYLRDTLRVDVALDHRADDFAEQLRAATLDGIDIYFENVGGKVFDAVLPQLND
ECCHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
FARIPVCGVIATYNSRGQVLPGPDRLPEFIGQLLRKRLTVRGFIQHDVIRLMPAFLREMG
HCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWLREDKIQYREHVLHGLDSAPQGLVDVLRGKNFGKAVVALD
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure 
TSLTNRRIVLASRPQGEPSADNFRIEDIAVPPTGHDQILVRNRFLSLDPYMRGRMDDGP
CCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEECCEECCCHHHCCCCCCCC
SYVAPVAIDALMEGGTVGEVIESNHADYHPGDLLVLPGGWQTHSLLTPKTPLRKLPQDDG
CEEHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCC
LPPSTALGVYGMPGFTAYAGLHEIGKPQSGETLVVAAASGPVGATVAQLARLQGLRVVAI
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEE
AGGEEKVRYLRDTLRVDVALDHRADDFAEQLRAATLDGIDIYFENVGGKVFDAVLPQLND
ECCHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
FARIPVCGVIATYNSRGQVLPGPDRLPEFIGQLLRKRLTVRGFIQHDVIRLMPAFLREMG
HCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWLREDKIQYREHVLHGLDSAPQGLVDVLRGKNFGKAVVALD
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]