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The map label for this gene is opuCB [H]

Identifier: 84625907

GI number: 84625907

Start: 4806074

End: 4807543

Strand: Reverse

Name: opuCB [H]

Synonym: XOO_4250

Alternate gene names: 84625907

Gene position: 4807543-4806074 (Counterclockwise)

Preceding gene: 84625908

Following gene: 84625905

Centisome position: 97.31

GC content: 64.35

Gene sequence:

>1470_bases
ATGGCGCGTGCGCTCATCGCTGCGATGTTGCTAATCTGCAGCCTTGCCGCACACGCAGCGCAAGTCACTATCGGCTCGAA
GAACTTCACAGAAGCGGTGATCCTGGGCGACATCGCCACCGCCGCCGGCAAGCGCGATGGCGTGGATGTGCAGCACCGCG
CCCAACTCGGTGGCACGCGTATCCTGTGGCGCGCGTTGCAGACCGGGCAGATCGACGCGTATGCCGAATACACCGGCACG
CTGGCGCAGGAACTGCTGCAACTGCCCACCGCCAGCCAGGCCGAACTGCGTGCAGCACTCGACGCGCGCGGGCTGGCGAT
GACCGATTCGCTGGGTTTCCAGAACACCTACGCATTCGGTATGAGGCGCGAACGTGCGCAGGCGTTGGGCATCGTCTCGC
TGTCGGATCTTGCGCGGCATCCCACGCTTAAGATCGGTCTGAGCAACGAATTCATGCAGCGTGCCGATGGCTGGCCGGGT
GTGCGTGCGGCGTACGCGCTGCCGCAAACCGCAACCGGGCTGGATCACGACTTGGCCTATCGCGCGCTGCAGAACGGTGC
GATCGAAGTCACCGATCTGTACAGCACCGATGCGGAAATTCCGTATTACCAACTGCAGGTGCTGCGCGACGACCGCCACT
ATTTCCCCGATTACCAAGCGATTTTTTTATATCGCAAGGATCTGGCGCAACGCTCGCCGGCAATGTTGCAGGCTTTGCAG
GGGCTGCAAGGGCGCATCGATGAAGCCACCATGCAGCGGCTCAACGCGCAGGTAAAACTGGAGCGGCAGTCCGAAGCGGC
GGTTGCCGCGCATTGGTTGGGCCTCACGCCGGCCTCTGAAACGGATTCGCGTGTGGCGCGCTTGCTTCGGTATACGCGCG
AGCATCTGGCGTTGGTCGGCATTTCGCTGGGGCTGGCGTTGCTGCTTGCGCTGCCGCTGGGTGTGCTGGCAGCGCGGCGT
CCACGCCTGGGGCAGGTGGTGTTGTCCTTGACCGGTGTGCTGCAGACGCTGCCGTCGCTGGCCGTGTTCGTTTTCATGAT
TCCGTTGTTCGGTATCGGCGCCAAACCAGCGATTGCCGCGCTGTTTCTGTATAGCCTGCTGCCGATCGTACGCAATACCC
ACGCTGGGCTGACCTCGATCCCGCGCGAGCTGCGCCAGACCGCGCACGCGATTGGGTTACCGGCGTGGACGCGCCTGTGG
CGTGTGGAACTGCCGCTGGCCCGCCGCACGATTGTGGCCGGCATCCAGACTGCCGCGGTGATCAATGTGGGTACCACCAC
GCTGGGCGCGTTGATCGGCGCAGGCGGCTACGGTCAGCCGATTCTCACTGGCATCCGCCTCGACGATCTCGGCTTGATTT
TGGAAGGCGCCCTTCCCGCCGCCGTGCTGGCACTGCTGGTGCAGGCGGCGTTCGAAGGACTGGAGCGCTGGGCGACGCCG
CGCGGGTTGCGGATCAGTCAGCGGCAGTGA

Upstream 100 bases:

>100_bases
TCGTGCAGCAGGGCAGTGCGCGCGATCTGCTGGAGCAGCCGGCCGATGCGTTCGTGCAGCGCTTTCTCACCGCGCAGCGC
AACATTGGCGATGCCGCATG

Downstream 100 bases:

>100_bases
CGTGTTGCGTGCGTCGGCAGTCGTGGGATCGCGATTCGGTGTTATCCGTAGTGACCCATCGCCGGCGAGCCCGCTCCTAC
AAAGATCGGGTCGATCGGCT

Product: ABC transporter amino acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MARALIAAMLLICSLAAHAAQVTIGSKNFTEAVILGDIATAAGKRDGVDVQHRAQLGGTRILWRALQTGQIDAYAEYTGT
LAQELLQLPTASQAELRAALDARGLAMTDSLGFQNTYAFGMRRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPG
VRAAYALPQTATGLDHDLAYRALQNGAIEVTDLYSTDAEIPYYQLQVLRDDRHYFPDYQAIFLYRKDLAQRSPAMLQALQ
GLQGRIDEATMQRLNAQVKLERQSEAAVAAHWLGLTPASETDSRVARLLRYTREHLALVGISLGLALLLALPLGVLAARR
PRLGQVVLSLTGVLQTLPSLAVFVFMIPLFGIGAKPAIAALFLYSLLPIVRNTHAGLTSIPRELRQTAHAIGLPAWTRLW
RVELPLARRTIVAGIQTAAVINVGTTTLGALIGAGGYGQPILTGIRLDDLGLILEGALPAAVLALLVQAAFEGLERWATP
RGLRISQRQ

Sequences:

>Translated_489_residues
MARALIAAMLLICSLAAHAAQVTIGSKNFTEAVILGDIATAAGKRDGVDVQHRAQLGGTRILWRALQTGQIDAYAEYTGT
LAQELLQLPTASQAELRAALDARGLAMTDSLGFQNTYAFGMRRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPG
VRAAYALPQTATGLDHDLAYRALQNGAIEVTDLYSTDAEIPYYQLQVLRDDRHYFPDYQAIFLYRKDLAQRSPAMLQALQ
GLQGRIDEATMQRLNAQVKLERQSEAAVAAHWLGLTPASETDSRVARLLRYTREHLALVGISLGLALLLALPLGVLAARR
PRLGQVVLSLTGVLQTLPSLAVFVFMIPLFGIGAKPAIAALFLYSLLPIVRNTHAGLTSIPRELRQTAHAIGLPAWTRLW
RVELPLARRTIVAGIQTAAVINVGTTTLGALIGAGGYGQPILTGIRLDDLGLILEGALPAAVLALLVQAAFEGLERWATP
RGLRISQRQ
>Mature_488_residues
ARALIAAMLLICSLAAHAAQVTIGSKNFTEAVILGDIATAAGKRDGVDVQHRAQLGGTRILWRALQTGQIDAYAEYTGTL
AQELLQLPTASQAELRAALDARGLAMTDSLGFQNTYAFGMRRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPGV
RAAYALPQTATGLDHDLAYRALQNGAIEVTDLYSTDAEIPYYQLQVLRDDRHYFPDYQAIFLYRKDLAQRSPAMLQALQG
LQGRIDEATMQRLNAQVKLERQSEAAVAAHWLGLTPASETDSRVARLLRYTREHLALVGISLGLALLLALPLGVLAARRP
RLGQVVLSLTGVLQTLPSLAVFVFMIPLFGIGAKPAIAALFLYSLLPIVRNTHAGLTSIPRELRQTAHAIGLPAWTRLWR
VELPLARRTIVAGIQTAAVINVGTTTLGALIGAGGYGQPILTGIRLDDLGLILEGALPAAVLALLVQAAFEGLERWATPR
GLRISQRQ

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=183, Percent_Identity=36.6120218579235, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1788451, Length=195, Percent_Identity=35.3846153846154, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1789033, Length=180, Percent_Identity=31.1111111111111, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1788452, Length=286, Percent_Identity=30.0699300699301, Blast_Score=96, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 52841; Mature: 52710

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARALIAAMLLICSLAAHAAQVTIGSKNFTEAVILGDIATAAGKRDGVDVQHRAQLGGTR
CHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHEEHHHHHHCCCCCCCCHHHHHHCCCHH
ILWRALQTGQIDAYAEYTGTLAQELLQLPTASQAELRAALDARGLAMTDSLGFQNTYAFG
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHH
MRRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQTATGLDHDLAY
HHHHHHHHHCCEEHHHHHCCCEEEEECCHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHH
RALQNGAIEVTDLYSTDAEIPYYQLQVLRDDRHYFPDYQAIFLYRKDLAQRSPAMLQALQ
HHHHCCCEEEEEECCCCCCCCHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
GLQGRIDEATMQRLNAQVKLERQSEAAVAAHWLGLTPASETDSRVARLLRYTREHLALVG
HHHCCCCHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
ISLGLALLLALPLGVLAARRPRLGQVVLSLTGVLQTLPSLAVFVFMIPLFGIGAKPAIAA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LFLYSLLPIVRNTHAGLTSIPRELRQTAHAIGLPAWTRLWRVELPLARRTIVAGIQTAAV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHEEECCHHHHHHHHHHHHHEE
INVGTTTLGALIGAGGYGQPILTGIRLDDLGLILEGALPAAVLALLVQAAFEGLERWATP
EECCHHHHHHHHCCCCCCCHHHCCCEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
RGLRISQRQ
CCCCCCCCC
>Mature Secondary Structure 
ARALIAAMLLICSLAAHAAQVTIGSKNFTEAVILGDIATAAGKRDGVDVQHRAQLGGTR
HHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHEEHHHHHHCCCCCCCCHHHHHHCCCHH
ILWRALQTGQIDAYAEYTGTLAQELLQLPTASQAELRAALDARGLAMTDSLGFQNTYAFG
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHH
MRRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQTATGLDHDLAY
HHHHHHHHHCCEEHHHHHCCCEEEEECCHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHH
RALQNGAIEVTDLYSTDAEIPYYQLQVLRDDRHYFPDYQAIFLYRKDLAQRSPAMLQALQ
HHHHCCCEEEEEECCCCCCCCHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
GLQGRIDEATMQRLNAQVKLERQSEAAVAAHWLGLTPASETDSRVARLLRYTREHLALVG
HHHCCCCHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
ISLGLALLLALPLGVLAARRPRLGQVVLSLTGVLQTLPSLAVFVFMIPLFGIGAKPAIAA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LFLYSLLPIVRNTHAGLTSIPRELRQTAHAIGLPAWTRLWRVELPLARRTIVAGIQTAAV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHEEECCHHHHHHHHHHHHHEE
INVGTTTLGALIGAGGYGQPILTGIRLDDLGLILEGALPAAVLALLVQAAFEGLERWATP
EECCHHHHHHHHCCCCCCCHHHCCCEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
RGLRISQRQ
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]