| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84625905
Identifier: 84625905
GI number: 84625905
Start: 4803251
End: 4804534
Strand: Reverse
Name: 84625905
Synonym: XOO_4248
Alternate gene names: NA
Gene position: 4804534-4803251 (Counterclockwise)
Preceding gene: 84625907
Following gene: 84625904
Centisome position: 97.25
GC content: 64.64
Gene sequence:
>1284_bases ATGTCTGCACTCTCCCCTCTGCTGGTCCATCACCAGCAACGGCAGTTGACGCTGCTGGAACGTTACGCGCAGACACGCGC GTTGAGCGATCGTCTCGCCGCACCGTTAAGCGCAGAAGACGCGATGGTGCAGAGCATGCCGGACGCGAGCCCCAGCAAAT GGCATCTGGCGCACACCACCTGGTTTTTTGAACGCTTCGTGCTGCAGACCGATCCGGCGTACCGCGTGTTCGACCCGGCC TGGGATTTCCTGTTCAACAGTTACTACCAGAGCGTGGGCCCGATGCATGCGCGCGCGTGCCGCGGGGTGCTGTCGCGCCC CGCGTTGCAGCAGGTGCGCGATTACCGTGCTGTGGTGGATGCACAGATACAGCAGCGCCTGCGCGATGGCCTACTCGACG CGCAGGCCTGCATCATCGTGCAGCTCGGTATCCAGCACGAGCAGCAGCACCAGGAGTTGTTGCTCACCGACATCAAACAT GCACTGTGGAGCAATCCGTTGCAGACGGCGTATCGTGATGCCGCTGCGCCACCCACGGCCGTCGCCAGCACGTTGCGCTG GCACGCGCGCGACGAACAGATCGTCGAGATCGGGGCCGCAGCCTGGCCACAGGCCGACACCTTCGCCTACGACAACGAAT CGCCGCGCCACCGCGTGCTGGTCGGCGCGCATGCGTTGGCGAACCGCGTGGTGACCAACGCGGAGTTCCAGGAATTCATC GATGCCGGCGGTTATCGCAGCGCCGTCGCCTGGCTCAGCGATGGCTGGGCGATGGTGCAGGCGCAAGGTTGGCAACATCC CTTGTACTGGGATGCCGATGGCCGCGAGTTCACGCTGGACGGTTGGCGTACGCGCGATCCGCATGCGCCGGTCTGCCACC TGAGTCTGTTCGAAGCCGATGCGTTCGCACGCTGGGCCGGTGCGCGCCTGCCCACCGAAGCCGAGTGGGAACAGGCCGCG ACCGGCATGTCGGTGCAGGGCAATTTCGTCGACACCGATGCGCTGCATCCGCGTGGCGCCGAAGCAGTGGACACCGGCAT CCAGCAGCTGTTCGGTGATGTCTGGGAATGGACCGGCAGTGCGTATCTGCCGTATCCAGGCTTTACGCCATGGCCCGGGT CGCTGGGCGAGTACAACGGCAAATTCATGAATGCGCAGTGGGTGCTGCGTGGCGGCAGTTGCGCCAGCCCCGCCAGCCAT CTGCGTGCCAGCTACCGCAACTTTTTCCCCTCCGATGCGCGTTGGCAATTTGCCGGCGTGCGCCTTGCCAAGGATCTGCC TTGA
Upstream 100 bases:
>100_bases AGCGTGCTGGACAGAAAAGACGATGACATGCCAACAGCTTACCGCTGCCTGCCACGCTGCCGACACGGCACGTTCACGGG CGCTACCCAACCATAGGGCG
Downstream 100 bases:
>100_bases ACGCCGCCGCCCATGCCATGCAACGCGCGCACGCTGCGCTGACCGACCTGCGCCCACAGCCGGACGACATCACCGCCGAT GCATTGGCGGGCCTGTCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MSALSPLLVHHQQRQLTLLERYAQTRALSDRLAAPLSAEDAMVQSMPDASPSKWHLAHTTWFFERFVLQTDPAYRVFDPA WDFLFNSYYQSVGPMHARACRGVLSRPALQQVRDYRAVVDAQIQQRLRDGLLDAQACIIVQLGIQHEQQHQELLLTDIKH ALWSNPLQTAYRDAAAPPTAVASTLRWHARDEQIVEIGAAAWPQADTFAYDNESPRHRVLVGAHALANRVVTNAEFQEFI DAGGYRSAVAWLSDGWAMVQAQGWQHPLYWDADGREFTLDGWRTRDPHAPVCHLSLFEADAFARWAGARLPTEAEWEQAA TGMSVQGNFVDTDALHPRGAEAVDTGIQQLFGDVWEWTGSAYLPYPGFTPWPGSLGEYNGKFMNAQWVLRGGSCASPASH LRASYRNFFPSDARWQFAGVRLAKDLP
Sequences:
>Translated_427_residues MSALSPLLVHHQQRQLTLLERYAQTRALSDRLAAPLSAEDAMVQSMPDASPSKWHLAHTTWFFERFVLQTDPAYRVFDPA WDFLFNSYYQSVGPMHARACRGVLSRPALQQVRDYRAVVDAQIQQRLRDGLLDAQACIIVQLGIQHEQQHQELLLTDIKH ALWSNPLQTAYRDAAAPPTAVASTLRWHARDEQIVEIGAAAWPQADTFAYDNESPRHRVLVGAHALANRVVTNAEFQEFI DAGGYRSAVAWLSDGWAMVQAQGWQHPLYWDADGREFTLDGWRTRDPHAPVCHLSLFEADAFARWAGARLPTEAEWEQAA TGMSVQGNFVDTDALHPRGAEAVDTGIQQLFGDVWEWTGSAYLPYPGFTPWPGSLGEYNGKFMNAQWVLRGGSCASPASH LRASYRNFFPSDARWQFAGVRLAKDLP >Mature_426_residues SALSPLLVHHQQRQLTLLERYAQTRALSDRLAAPLSAEDAMVQSMPDASPSKWHLAHTTWFFERFVLQTDPAYRVFDPAW DFLFNSYYQSVGPMHARACRGVLSRPALQQVRDYRAVVDAQIQQRLRDGLLDAQACIIVQLGIQHEQQHQELLLTDIKHA LWSNPLQTAYRDAAAPPTAVASTLRWHARDEQIVEIGAAAWPQADTFAYDNESPRHRVLVGAHALANRVVTNAEFQEFID AGGYRSAVAWLSDGWAMVQAQGWQHPLYWDADGREFTLDGWRTRDPHAPVCHLSLFEADAFARWAGARLPTEAEWEQAAT GMSVQGNFVDTDALHPRGAEAVDTGIQQLFGDVWEWTGSAYLPYPGFTPWPGSLGEYNGKFMNAQWVLRGGSCASPASHL RASYRNFFPSDARWQFAGVRLAKDLP
Specific function: Unknown
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI257470975, Length=177, Percent_Identity=29.3785310734463, Blast_Score=72, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47994; Mature: 47863
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALSPLLVHHQQRQLTLLERYAQTRALSDRLAAPLSAEDAMVQSMPDASPSKWHLAHTT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEHHHH WFFERFVLQTDPAYRVFDPAWDFLFNSYYQSVGPMHARACRGVLSRPALQQVRDYRAVVD HHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHH AQIQQRLRDGLLDAQACIIVQLGIQHEQQHQELLLTDIKHALWSNPLQTAYRDAAAPPTA HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHH VASTLRWHARDEQIVEIGAAAWPQADTFAYDNESPRHRVLVGAHALANRVVTNAEFQEFI HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCHHHHHHH DAGGYRSAVAWLSDGWAMVQAQGWQHPLYWDADGREFTLDGWRTRDPHAPVCHLSLFEAD HCCCHHHHHHHHHCCEEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCEEEEEEHHHH AFARWAGARLPTEAEWEQAATGMSVQGNFVDTDALHPRGAEAVDTGIQQLFGDVWEWTGS HHHHHHCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCC AYLPYPGFTPWPGSLGEYNGKFMNAQWVLRGGSCASPASHLRASYRNFFPSDARWQFAGV EECCCCCCCCCCCCCCCCCCCEECEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECE RLAKDLP EHHCCCC >Mature Secondary Structure SALSPLLVHHQQRQLTLLERYAQTRALSDRLAAPLSAEDAMVQSMPDASPSKWHLAHTT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEHHHH WFFERFVLQTDPAYRVFDPAWDFLFNSYYQSVGPMHARACRGVLSRPALQQVRDYRAVVD HHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHH AQIQQRLRDGLLDAQACIIVQLGIQHEQQHQELLLTDIKHALWSNPLQTAYRDAAAPPTA HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHH VASTLRWHARDEQIVEIGAAAWPQADTFAYDNESPRHRVLVGAHALANRVVTNAEFQEFI HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCHHHHHHH DAGGYRSAVAWLSDGWAMVQAQGWQHPLYWDADGREFTLDGWRTRDPHAPVCHLSLFEAD HCCCHHHHHHHHHCCEEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCEEEEEEHHHH AFARWAGARLPTEAEWEQAATGMSVQGNFVDTDALHPRGAEAVDTGIQQLFGDVWEWTGS HHHHHHCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCC AYLPYPGFTPWPGSLGEYNGKFMNAQWVLRGGSCASPASHLRASYRNFFPSDARWQFAGV EECCCCCCCCCCCCCCCCCCCEECEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECE RLAKDLP EHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA