| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is glnA [H]
Identifier: 84625885
GI number: 84625885
Start: 4779910
End: 4781319
Strand: Reverse
Name: glnA [H]
Synonym: XOO_4228
Alternate gene names: 84625885
Gene position: 4781319-4779910 (Counterclockwise)
Preceding gene: 84625888
Following gene: 84625884
Centisome position: 96.78
GC content: 61.56
Gene sequence:
>1410_bases ATGTCCGTGGAAAATGTTGAAAAGCTGATCAAGGACAACAAGGTCGAGTTCGTCGACCTGCGCTTCGTCGATATGCGTGG TGTACAGCAGCACATCACCTTTCCGGCCAATATCATCGAGCCGGCGCTGTTTGAAGAAGGCAAGATGTTCGACGGCAGTT CGATCGCGGGTTGGAAGGGCATCAACGAGTCGGACATGGTGCTGCTGCCGGACGCAGGCACCGCGTATCTGGATCCGTTC TTCGCCGATCCGACCATCGTGCTGACCTGCGACATCCTTGACCCGGCCACCATGCAGAGCTATGAGCGCGATCCGCGCGG CATCGCCAAGCGCGCCGAGGCCTATCTGAAGTCGTCCGGCACCGCCGACCAGGCGTTCTTCGGCCCGGAGCCGGAATTCT TCATCTTCGATTCGGTGCGCTTTGCCAACGACATGGGCCACACCTTCTTCCAGGTGGGTTCGGAAGAAGCGGCCTGGAAT ACCGGTGAAAAGTACGACGGCGGCAATAGCGGCTACCGTCCGGGCGTGAAGGGCGGCTACTTCCCGGTTCCGCCGACCGA CACCCTGCACGACCTGCGCGCGGAAATGATCAAGACGCTGGAACAGGTCGGCATCGAAACCGAAGTGCACCACCACGAAG TGGCCACCGCCGGTCAGTGCGAAATCGGCACCAAGTTCAGCTCGCTGGTGCAGAAGGCCGACGAACTGCTGACGATGAAG TACATCATCAAGAACGTCGCCTACCGCAACGGCAAGACCGCCACCTTCATGCCCAAGCCCATCGTGGGCGACAACGGCTC GGGCATGCACGTGCACCAGTCGCTGGCCAAGGGCGGCGTCAACCTGTTCACCGGCGACGGCTACGGCGGTTTGTCGCAGC TGGCGCTGTGGTACATCGGCGGCATCTTTAAGCACGCCCGCGCGATCAACGCCTTCGCCAACTCCGGCACCAACAGCTAC AAGCGTCTGGTTCCGGGCTTCGAGGCACCAGTGATGCTGGCCTATTCGGCGCGTAACCGCTCGGCGTCGTGCCGTATTCC GTGGGTCACCAACCCGAAGGCGCGCCGCATCGAAATGCGCTTCCCCGATCCGTTGCAGTCCGGCTACCTGACCTTCACCG CGCTGATGATGGCCGGCTTGGACGGCATCAAGAACCAGATCGACCCTGGCGCACCGAGCGACAAGGACCTGTACGACCTG CCGCCGGAAGAAGAGAAGCTGATTCCGCAGGTCTGCTCCAGCCTGGATCAGGCCCTGGACGCGCTGGACAAGGACCGCGA GTTCCTCAAGGCCGGCGGCGTGATGAGCGACGACTTCATCGACGGCTATATCGCGCTGAAGATGCAGGAAGTCACCAAGT TCCGTGCTGCGACCCACCCGTTGGAGTACCAGCTGTACTACGGCAACTGA
Upstream 100 bases:
>100_bases CGCAAGCAAAATCAAGGGCTTGTGAAGCTCGATGGCTTGGCACGGTCCCTGCTGAGCTACCGGCCACGAGCCACTTAACT CCTACCTGAGGTTTCTTCCG
Downstream 100 bases:
>100_bases GTTCCACCGCTGCGATGGCGGAGGCCCCCCCTCCCACCTCCGCCATCGCCGCACACGTGTTCGAGCGATCCATGGCACCG GCCGTGGATTGCAGGGGTAT
Product: glutamine synthetase
Products: NA
Alternate protein names: Glutamate--ammonia ligase [H]
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MSVENVEKLIKDNKVEFVDLRFVDMRGVQQHITFPANIIEPALFEEGKMFDGSSIAGWKGINESDMVLLPDAGTAYLDPF FADPTIVLTCDILDPATMQSYERDPRGIAKRAEAYLKSSGTADQAFFGPEPEFFIFDSVRFANDMGHTFFQVGSEEAAWN TGEKYDGGNSGYRPGVKGGYFPVPPTDTLHDLRAEMIKTLEQVGIETEVHHHEVATAGQCEIGTKFSSLVQKADELLTMK YIIKNVAYRNGKTATFMPKPIVGDNGSGMHVHQSLAKGGVNLFTGDGYGGLSQLALWYIGGIFKHARAINAFANSGTNSY KRLVPGFEAPVMLAYSARNRSASCRIPWVTNPKARRIEMRFPDPLQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDL PPEEEKLIPQVCSSLDQALDALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYGN
Sequences:
>Translated_469_residues MSVENVEKLIKDNKVEFVDLRFVDMRGVQQHITFPANIIEPALFEEGKMFDGSSIAGWKGINESDMVLLPDAGTAYLDPF FADPTIVLTCDILDPATMQSYERDPRGIAKRAEAYLKSSGTADQAFFGPEPEFFIFDSVRFANDMGHTFFQVGSEEAAWN TGEKYDGGNSGYRPGVKGGYFPVPPTDTLHDLRAEMIKTLEQVGIETEVHHHEVATAGQCEIGTKFSSLVQKADELLTMK YIIKNVAYRNGKTATFMPKPIVGDNGSGMHVHQSLAKGGVNLFTGDGYGGLSQLALWYIGGIFKHARAINAFANSGTNSY KRLVPGFEAPVMLAYSARNRSASCRIPWVTNPKARRIEMRFPDPLQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDL PPEEEKLIPQVCSSLDQALDALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYGN >Mature_468_residues SVENVEKLIKDNKVEFVDLRFVDMRGVQQHITFPANIIEPALFEEGKMFDGSSIAGWKGINESDMVLLPDAGTAYLDPFF ADPTIVLTCDILDPATMQSYERDPRGIAKRAEAYLKSSGTADQAFFGPEPEFFIFDSVRFANDMGHTFFQVGSEEAAWNT GEKYDGGNSGYRPGVKGGYFPVPPTDTLHDLRAEMIKTLEQVGIETEVHHHEVATAGQCEIGTKFSSLVQKADELLTMKY IIKNVAYRNGKTATFMPKPIVGDNGSGMHVHQSLAKGGVNLFTGDGYGGLSQLALWYIGGIFKHARAINAFANSGTNSYK RLVPGFEAPVMLAYSARNRSASCRIPWVTNPKARRIEMRFPDPLQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDLP PEEEKLIPQVCSSLDQALDALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYGN
Specific function: Unknown
COG id: COG0174
COG function: function code E; Glutamine synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glutamine synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1790301, Length=467, Percent_Identity=63.3832976445396, Blast_Score=649, Evalue=0.0, Organism=Escherichia coli, GI87081870, Length=391, Percent_Identity=23.2736572890026, Blast_Score=78, Evalue=1e-15,
Paralogues:
None
Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 15324 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal medi
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008147 - InterPro: IPR014746 - InterPro: IPR008146 - InterPro: IPR004809 - InterPro: IPR001637 [H]
Pfam domain/function: PF00120 Gln-synt_C; PF03951 Gln-synt_N [H]
EC number: =6.3.1.2 [H]
Molecular weight: Translated: 51818; Mature: 51687
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS00180 GLNA_1 ; PS00181 GLNA_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVENVEKLIKDNKVEFVDLRFVDMRGVQQHITFPANIIEPALFEEGKMFDGSSIAGWKG CCHHHHHHHHHCCCEEEEEEEEECHHCHHHHCCCCHHHHCHHHHCCCCCCCCCCCCCCCC INESDMVLLPDAGTAYLDPFFADPTIVLTCDILDPATMQSYERDPRGIAKRAEAYLKSSG CCCCCEEEECCCCCHHCCCCCCCCEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHCCC TADQAFFGPEPEFFIFDSVRFANDMGHTFFQVGSEEAAWNTGEKYDGGNSGYRPGVKGGY CCCCCCCCCCCCEEEEECHHHHHHHCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCC FPVPPTDTLHDLRAEMIKTLEQVGIETEVHHHEVATAGQCEIGTKFSSLVQKADELLTMK CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH YIIKNVAYRNGKTATFMPKPIVGDNGSGMHVHQSLAKGGVNLFTGDGYGGLSQLALWYIG HHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH GIFKHARAINAFANSGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPWVTNPKARRIEMR HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCEEEEC FPDPLQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDLPPEEEKLIPQVCSSLDQALD CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYGN HHHHHHHHHHHCCCCCCHHCCCEEEEEHHHHHHHHHHCCCEEEEEEECC >Mature Secondary Structure SVENVEKLIKDNKVEFVDLRFVDMRGVQQHITFPANIIEPALFEEGKMFDGSSIAGWKG CHHHHHHHHHCCCEEEEEEEEECHHCHHHHCCCCHHHHCHHHHCCCCCCCCCCCCCCCC INESDMVLLPDAGTAYLDPFFADPTIVLTCDILDPATMQSYERDPRGIAKRAEAYLKSSG CCCCCEEEECCCCCHHCCCCCCCCEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHCCC TADQAFFGPEPEFFIFDSVRFANDMGHTFFQVGSEEAAWNTGEKYDGGNSGYRPGVKGGY CCCCCCCCCCCCEEEEECHHHHHHHCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCC FPVPPTDTLHDLRAEMIKTLEQVGIETEVHHHEVATAGQCEIGTKFSSLVQKADELLTMK CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH YIIKNVAYRNGKTATFMPKPIVGDNGSGMHVHQSLAKGGVNLFTGDGYGGLSQLALWYIG HHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH GIFKHARAINAFANSGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPWVTNPKARRIEMR HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCEEEEC FPDPLQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDLPPEEEKLIPQVCSSLDQALD CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYGN HHHHHHHHHHHCCCCCCHHCCCEEEEEHHHHHHHHHHCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1969923 [H]