| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84625798
Identifier: 84625798
GI number: 84625798
Start: 4669462
End: 4671051
Strand: Reverse
Name: 84625798
Synonym: XOO_4141
Alternate gene names: NA
Gene position: 4671051-4669462 (Counterclockwise)
Preceding gene: 84625799
Following gene: 84625792
Centisome position: 94.55
GC content: 65.72
Gene sequence:
>1590_bases ATGTCCAGTTCGACGGGCGCGCTGCACTGGCAGACGGCGCAGGCCGCGTTGGCACGTCGCGACCTGGGTGTGGCGGGGTC CGCACTGCAGGCGTTGCTGGAGGTCGAGCCGACACATGTGTCGGCGCGCGTGCTGCTGGCCGGCACCGTGCTGGCCAACG GCCGCATGCGCGAAGCGGTGGCGCAGCTGCAGCTGGCCGCACGCGATGTCGACGATGACGTGGCGATGCGTTGCCGCGTG GCGCAGGCCTTGTTGCGCGTCGGCGCACATCGCCAATTACACGGGCTGCTGCGGCATCCCTCGGTGATGCAGTGCCGCGA CGGCGCGACCTTGGCCTTGCTCGCACACGTGCACCAATCCTTGGGCGAACACGTCGACGCCCTGGCAATGATGCAGCGCG CACAGGTCTGCGGATTCGATGGGCCGGACTTCCGTTTTTTTCTCGCAGTGCAACTGCAGTTCAATGGTCGCCTGGATGAC GCAGCGCAGGCCTTGGAGCAGACCCTGGCGCTGGTGCCGGGCTACGGCCGCGCGGCACTCACGCGTGCGCGGCTGCGCCG TCAAACCGTCAGCAGCAACCATGTCGACCAATTACGCCAGCAGTTGCAGCGTTCCAAACCCGACAGCGAAGATCGCGCCG GGCTGGCATTTGCGTTGTACAAAGAGTTGGAAGATCTCGGCGACACCGATGCCGCCTGGGACGCACTGCAGCACGGCAAT GCGGTGATGCATGCACGTCTGCGCCACGATGCGAACGCCGAAGCAGCGCTGTACGCGCAGCTGGGTGCGTTGGCGGCGCA AGGCGTGTTCGCAGCGCAGGACACCGGCACCGTGCAAGGTCCGCAGCCGATCTTCGTGCTCGGGCTGCCGCGCTCGGGTA CCACGGTGCTGGAGCGGATGCTGGGCAATCATTCGCAAATCGTGTCGGCCGGCGAATTGAACGACTTCGGCCACCAGCTG CGCTGGGGTGCGGATCAGGCTGGCCGCAGTCTGCTGGACGCGGGATTGCTGCAGGCGTTCCCAACGCTGGATTACACGCA GATTGGCGCGCGGTATCTCGAACAGACCCAGTGGCGTGCCGGACCGGCGCGCTGGTATATCGATAAATTGCCCGCCAATG CGGTGGCGATCGGTGCAATCGCGCGCGCGCTGCCGGGTGCGCTGATCGTGCATCTGGTGCGCGAGCCGATGGCGGTGTGC TTCTCCAACTACCGCGCGCTGTTCGGCGATTCGTATGCCTACAGCTACGACGTGCACACGCTGGCGCGCCACTATCAGGC GTATCACGGGTTGATGGCGCAATGGCGCGCGGCATTGCCGGGCCGGGTGATCGATGTGGACTATACGCAGATGGTGCGCG ATCCATCCACGGTGTTGCAGCAGTTGATGGCACGTTGCGGCTTGGACATCGAACCTGGGCAGAGCGACATCACGCGTAAT GCGGCGGCGTCGGCCACGCTGAGCAGTGTGCAGGTGCGCGAGGGCGTGCACAGTCGCAATGTGGAGCACTGGCGGCGCTA TGCCGTCCAGCTGGAGCCGCTGCGGCAGGTGTTGTCAGAGGCTGGCCTGATCGATGCCGGCTTGCATTAA
Upstream 100 bases:
>100_bases ATGCCGAAGACCCGCAGCTGCGTGCCAACCGCCTTGCCCTGCTGAAGAAGCTCGGCGACCGCCTCGGCAGCGTCGCCGCC ATCGAGCACTTGTCCAGCTG
Downstream 100 bases:
>100_bases CAGCGGCATTTAGATCTTGGGCGCAGCAGCAGACGCGCTGCGAGCGCACTTGATCTGCCTCTACTCCGATGCTTACCAAT GCAATCGCCTCGGTGGACAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MSSSTGALHWQTAQAALARRDLGVAGSALQALLEVEPTHVSARVLLAGTVLANGRMREAVAQLQLAARDVDDDVAMRCRV AQALLRVGAHRQLHGLLRHPSVMQCRDGATLALLAHVHQSLGEHVDALAMMQRAQVCGFDGPDFRFFLAVQLQFNGRLDD AAQALEQTLALVPGYGRAALTRARLRRQTVSSNHVDQLRQQLQRSKPDSEDRAGLAFALYKELEDLGDTDAAWDALQHGN AVMHARLRHDANAEAALYAQLGALAAQGVFAAQDTGTVQGPQPIFVLGLPRSGTTVLERMLGNHSQIVSAGELNDFGHQL RWGADQAGRSLLDAGLLQAFPTLDYTQIGARYLEQTQWRAGPARWYIDKLPANAVAIGAIARALPGALIVHLVREPMAVC FSNYRALFGDSYAYSYDVHTLARHYQAYHGLMAQWRAALPGRVIDVDYTQMVRDPSTVLQQLMARCGLDIEPGQSDITRN AAASATLSSVQVREGVHSRNVEHWRRYAVQLEPLRQVLSEAGLIDAGLH
Sequences:
>Translated_529_residues MSSSTGALHWQTAQAALARRDLGVAGSALQALLEVEPTHVSARVLLAGTVLANGRMREAVAQLQLAARDVDDDVAMRCRV AQALLRVGAHRQLHGLLRHPSVMQCRDGATLALLAHVHQSLGEHVDALAMMQRAQVCGFDGPDFRFFLAVQLQFNGRLDD AAQALEQTLALVPGYGRAALTRARLRRQTVSSNHVDQLRQQLQRSKPDSEDRAGLAFALYKELEDLGDTDAAWDALQHGN AVMHARLRHDANAEAALYAQLGALAAQGVFAAQDTGTVQGPQPIFVLGLPRSGTTVLERMLGNHSQIVSAGELNDFGHQL RWGADQAGRSLLDAGLLQAFPTLDYTQIGARYLEQTQWRAGPARWYIDKLPANAVAIGAIARALPGALIVHLVREPMAVC FSNYRALFGDSYAYSYDVHTLARHYQAYHGLMAQWRAALPGRVIDVDYTQMVRDPSTVLQQLMARCGLDIEPGQSDITRN AAASATLSSVQVREGVHSRNVEHWRRYAVQLEPLRQVLSEAGLIDAGLH >Mature_528_residues SSSTGALHWQTAQAALARRDLGVAGSALQALLEVEPTHVSARVLLAGTVLANGRMREAVAQLQLAARDVDDDVAMRCRVA QALLRVGAHRQLHGLLRHPSVMQCRDGATLALLAHVHQSLGEHVDALAMMQRAQVCGFDGPDFRFFLAVQLQFNGRLDDA AQALEQTLALVPGYGRAALTRARLRRQTVSSNHVDQLRQQLQRSKPDSEDRAGLAFALYKELEDLGDTDAAWDALQHGNA VMHARLRHDANAEAALYAQLGALAAQGVFAAQDTGTVQGPQPIFVLGLPRSGTTVLERMLGNHSQIVSAGELNDFGHQLR WGADQAGRSLLDAGLLQAFPTLDYTQIGARYLEQTQWRAGPARWYIDKLPANAVAIGAIARALPGALIVHLVREPMAVCF SNYRALFGDSYAYSYDVHTLARHYQAYHGLMAQWRAALPGRVIDVDYTQMVRDPSTVLQQLMARCGLDIEPGQSDITRNA AASATLSSVQVREGVHSRNVEHWRRYAVQLEPLRQVLSEAGLIDAGLH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 8 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000863 - InterPro: IPR001440 - InterPro: IPR011717 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00685 Sulfotransfer_1; PF00515 TPR_1; PF07721 TPR_4 [H]
EC number: NA
Molecular weight: Translated: 57708; Mature: 57577
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSTGALHWQTAQAALARRDLGVAGSALQALLEVEPTHVSARVLLAGTVLANGRMREAV CCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH AQLQLAARDVDDDVAMRCRVAQALLRVGAHRQLHGLLRHPSVMQCRDGATLALLAHVHQS HHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHH LGEHVDALAMMQRAQVCGFDGPDFRFFLAVQLQFNGRLDDAAQALEQTLALVPGYGRAAL HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHH TRARLRRQTVSSNHVDQLRQQLQRSKPDSEDRAGLAFALYKELEDLGDTDAAWDALQHGN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC AVMHARLRHDANAEAALYAQLGALAAQGVFAAQDTGTVQGPQPIFVLGLPRSGTTVLERM HHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHH LGNHSQIVSAGELNDFGHQLRWGADQAGRSLLDAGLLQAFPTLDYTQIGARYLEQTQWRA HCCHHHEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC GPARWYIDKLPANAVAIGAIARALPGALIVHLVREPMAVCFSNYRALFGDSYAYSYDVHT CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHH LARHYQAYHGLMAQWRAALPGRVIDVDYTQMVRDPSTVLQQLMARCGLDIEPGQSDITRN HHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHH AAASATLSSVQVREGVHSRNVEHWRRYAVQLEPLRQVLSEAGLIDAGLH HHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SSSTGALHWQTAQAALARRDLGVAGSALQALLEVEPTHVSARVLLAGTVLANGRMREAV CCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH AQLQLAARDVDDDVAMRCRVAQALLRVGAHRQLHGLLRHPSVMQCRDGATLALLAHVHQS HHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHH LGEHVDALAMMQRAQVCGFDGPDFRFFLAVQLQFNGRLDDAAQALEQTLALVPGYGRAAL HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHH TRARLRRQTVSSNHVDQLRQQLQRSKPDSEDRAGLAFALYKELEDLGDTDAAWDALQHGN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC AVMHARLRHDANAEAALYAQLGALAAQGVFAAQDTGTVQGPQPIFVLGLPRSGTTVLERM HHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHH LGNHSQIVSAGELNDFGHQLRWGADQAGRSLLDAGLLQAFPTLDYTQIGARYLEQTQWRA HCCHHHEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC GPARWYIDKLPANAVAIGAIARALPGALIVHLVREPMAVCFSNYRALFGDSYAYSYDVHT CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHH LARHYQAYHGLMAQWRAALPGRVIDVDYTQMVRDPSTVLQQLMARCGLDIEPGQSDITRN HHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHH AAASATLSSVQVREGVHSRNVEHWRRYAVQLEPLRQVLSEAGLIDAGLH HHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]