Click here to switch to the map view.

The map label for this gene is ydeP [H]

Identifier: 84625736

GI number: 84625736

Start: 4603686

End: 4604117

Strand: Reverse

Name: ydeP [H]

Synonym: XOO_4079

Alternate gene names: 84625736

Gene position: 4604117-4603686 (Counterclockwise)

Preceding gene: 84625741

Following gene: 84625731

Centisome position: 93.2

GC content: 64.58

Gene sequence:

>432_bases
GTGAATGCGATTGCCCTGTTCCCGCCGCCGTCGTCCCTGGAAGGTCCCTTCGATGCCACCAAGTGCCCCGTGCGCGATGT
GCTCGACCAAATCGGTGACAAGTGGACCCTGCTGATCCTGCTGACGCTGATCCCCGGCCCGTCCCGTTTCAGCGCCATCC
AGCGCGCGGTACCGGACATCTCCAAGCGCATGCTCACCCAGACCCTGCGCAACCTTGAGCGCAACGGCATGATCACCCGC
AAGGTCTACGCCACCAAACCGCCGAGCGTGGAATATGCGCTCTCCAAGCTGGGCATCGCGCTGCTCGGTCCGGTCTCGCA
GCTACTCAACTGGGCGGGTGAACACCACGCCGACATCCGCGCCGCCCGCGAACGCTTCGATCGCGCGCAGCAGACGGTGG
TCACGCTGGATCGTGATGAAGCGATGGCATAG

Upstream 100 bases:

>100_bases
CTACTATCTAGACCTCTGTGTCCGCCAGCATGATGTCAGCGCCGCTCGGACCTCCGCAAGGAGGCAATTTTGCTCCCCCT
GGTTACCGTGAGATACCCCT

Downstream 100 bases:

>100_bases
CAGGCATCCTGCAATGTGAGTCGATGCGTTGCCGTGATCGAGCGGCGCTTGGCTGCGCATCGGCTTGACGCCTTGCAGGC
AGAAACCCGATGACTGATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MNAIALFPPPSSLEGPFDATKCPVRDVLDQIGDKWTLLILLTLIPGPSRFSAIQRAVPDISKRMLTQTLRNLERNGMITR
KVYATKPPSVEYALSKLGIALLGPVSQLLNWAGEHHADIRAARERFDRAQQTVVTLDRDEAMA

Sequences:

>Translated_143_residues
MNAIALFPPPSSLEGPFDATKCPVRDVLDQIGDKWTLLILLTLIPGPSRFSAIQRAVPDISKRMLTQTLRNLERNGMITR
KVYATKPPSVEYALSKLGIALLGPVSQLLNWAGEHHADIRAARERFDRAQQTVVTLDRDEAMA
>Mature_143_residues
MNAIALFPPPSSLEGPFDATKCPVRDVLDQIGDKWTLLILLTLIPGPSRFSAIQRAVPDISKRMLTQTLRNLERNGMITR
KVYATKPPSVEYALSKLGIALLGPVSQLLNWAGEHHADIRAARERFDRAQQTVVTLDRDEAMA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=111, Percent_Identity=36.9369369369369, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15876; Mature: 15876

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIALFPPPSSLEGPFDATKCPVRDVLDQIGDKWTLLILLTLIPGPSRFSAIQRAVPDI
CCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
SKRMLTQTLRNLERNGMITRKVYATKPPSVEYALSKLGIALLGPVSQLLNWAGEHHADIR
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AARERFDRAQQTVVTLDRDEAMA
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNAIALFPPPSSLEGPFDATKCPVRDVLDQIGDKWTLLILLTLIPGPSRFSAIQRAVPDI
CCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
SKRMLTQTLRNLERNGMITRKVYATKPPSVEYALSKLGIALLGPVSQLLNWAGEHHADIR
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AARERFDRAQQTVVTLDRDEAMA
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]