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The map label for this gene is rpfG [H]

Identifier: 84625646

GI number: 84625646

Start: 4496482

End: 4497741

Strand: Reverse

Name: rpfG [H]

Synonym: XOO_3989

Alternate gene names: 84625646

Gene position: 4497741-4496482 (Counterclockwise)

Preceding gene: 84625647

Following gene: 84625645

Centisome position: 91.04

GC content: 63.89

Gene sequence:

>1260_bases
ATGCTCAGAACCATCGACTCAGATCAACTCCGCCCCGGCATGTATGTCGACAAGCTGCTGGGCGCGTGGGTGCACCATCC
GTTCTGGAAGACCTCGTTCCTGGTCGATTCCGACGATGTGGACAAGATCCATGACAGCCGCATCGAACAGCTGGTGATCG
ATACCGCGCGTGGGCTGGATGTGGAAGTGCCCGCAAACGCTGGCGCGCACGCCGAACCGGACGCGCCGTCGAGCCCCGAG
CCTGCTCCGGCGCCTGCCGCGCCCGAACCGCCGGAGCCCGCTGCCAAACCGCGTAGCGTGCGCACCAACAGCGTCACCGC
GCAGGTCGGCATCGAAGCCGAGGTGCTGCGTGCACGCCGCATTTTCGAGGACGGCCGCGACACGGTCGAGGCGATGTTCC
GCGATGTGCGGCTGGGGCGCACGGTCGACACCGAGGCGGCCTTGCCGCTGGTGGAAGCCATTAACGACTCGGTGCTGCGA
CATCCGCAAGCCCTGATCAGCGTGGCGCGGCTCAAGACCGCCGACGACTACACCTATCTGCATTCGATGGCGGTGGCAGG
CCTGATGAGCGGGTTGGCGCGCCAGCTCGGCCTGCCGGAGGCGCAGGCGGTGGAAGCGGCAATGGGCGGGCTGCTGCACG
ACATGGGCAAGGCGGTGACGCCGTTGGAGATTCTCAACAAGCCCGGTCGGCTCACGACCGAAGAAATGGACGTCATGCGG
CAGCATCCGCTGGATGGCCATCGGCTGCTGGTGGCTGGCGGCGTGCAGAACGCGGTGGTGCTGGAAATTTCGCTGCATCA
CCACGAAAAAATGGATGGCAGCGGCTACCCGCATCAATTGGTCGGCGAAAATATTTCATTGATGTCGCGGATGGGCGCGG
TGTGCGATGTCTACGACGCCATCAGCTCGGACCGTCCTTACAAACGCGGCTGGGACCCGGCCGAATCGCTTAAGCAGATG
GCATCCTGGAAGGGCCATTTCGACCCGGCGATTTTCCAGGCCTTCGTGCGTCGGCTGGGCATTTATCCGGTCGGCTCGCT
GGTGCGGCTGGAGTCGCAAAAACTCGCGGTGGTGATCGAACAGACGCCCGATTCGTTGCTCAAGCCCAAGGTGCGCGTGT
TCTATTCGGCCAAGTTGCGCAGCCACGTGTTGGTGCAGGACATCGACCTGTCGCGCCCGGACAGCCAGGACCGCATTGTG
CAGATGGAAAGCCCCAGCGAGTGGGGCTTCCGCGATCTCGAAAAACTCTGGCTGCCGTAA

Upstream 100 bases:

>100_bases
GGTCGGTGGACCAAAGAAATCCGGCTTGCTGCCGATAGTTCGGAGGGCCGCCGCGTCTGTGGTGGATTCTTCCCTCGACA
TCGTGCACAGCAGAGCCGGC

Downstream 100 bases:

>100_bases
GCGGGCGGCGCAGGCGCTGGATTGACAGGCGCCGCAGCAGTGGCGTGCCGTGCGCCGCGACCGCCATGACGCCACCCTGG
GCAGATAACCCAACCGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MLRTIDSDQLRPGMYVDKLLGAWVHHPFWKTSFLVDSDDVDKIHDSRIEQLVIDTARGLDVEVPANAGAHAEPDAPSSPE
PAPAPAAPEPPEPAAKPRSVRTNSVTAQVGIEAEVLRARRIFEDGRDTVEAMFRDVRLGRTVDTEAALPLVEAINDSVLR
HPQALISVARLKTADDYTYLHSMAVAGLMSGLARQLGLPEAQAVEAAMGGLLHDMGKAVTPLEILNKPGRLTTEEMDVMR
QHPLDGHRLLVAGGVQNAVVLEISLHHHEKMDGSGYPHQLVGENISLMSRMGAVCDVYDAISSDRPYKRGWDPAESLKQM
ASWKGHFDPAIFQAFVRRLGIYPVGSLVRLESQKLAVVIEQTPDSLLKPKVRVFYSAKLRSHVLVQDIDLSRPDSQDRIV
QMESPSEWGFRDLEKLWLP

Sequences:

>Translated_419_residues
MLRTIDSDQLRPGMYVDKLLGAWVHHPFWKTSFLVDSDDVDKIHDSRIEQLVIDTARGLDVEVPANAGAHAEPDAPSSPE
PAPAPAAPEPPEPAAKPRSVRTNSVTAQVGIEAEVLRARRIFEDGRDTVEAMFRDVRLGRTVDTEAALPLVEAINDSVLR
HPQALISVARLKTADDYTYLHSMAVAGLMSGLARQLGLPEAQAVEAAMGGLLHDMGKAVTPLEILNKPGRLTTEEMDVMR
QHPLDGHRLLVAGGVQNAVVLEISLHHHEKMDGSGYPHQLVGENISLMSRMGAVCDVYDAISSDRPYKRGWDPAESLKQM
ASWKGHFDPAIFQAFVRRLGIYPVGSLVRLESQKLAVVIEQTPDSLLKPKVRVFYSAKLRSHVLVQDIDLSRPDSQDRIV
QMESPSEWGFRDLEKLWLP
>Mature_419_residues
MLRTIDSDQLRPGMYVDKLLGAWVHHPFWKTSFLVDSDDVDKIHDSRIEQLVIDTARGLDVEVPANAGAHAEPDAPSSPE
PAPAPAAPEPPEPAAKPRSVRTNSVTAQVGIEAEVLRARRIFEDGRDTVEAMFRDVRLGRTVDTEAALPLVEAINDSVLR
HPQALISVARLKTADDYTYLHSMAVAGLMSGLARQLGLPEAQAVEAAMGGLLHDMGKAVTPLEILNKPGRLTTEEMDVMR
QHPLDGHRLLVAGGVQNAVVLEISLHHHEKMDGSGYPHQLVGENISLMSRMGAVCDVYDAISSDRPYKRGWDPAESLKQM
ASWKGHFDPAIFQAFVRRLGIYPVGSLVRLESQKLAVVIEQTPDSLLKPKVRVFYSAKLRSHVLVQDIDLSRPDSQDRIV
QMESPSEWGFRDLEKLWLP

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 46310; Mature: 46310

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTIDSDQLRPGMYVDKLLGAWVHHPFWKTSFLVDSDDVDKIHDSRIEQLVIDTARGLD
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCE
VEVPANAGAHAEPDAPSSPEPAPAPAAPEPPEPAAKPRSVRTNSVTAQVGIEAEVLRARR
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
IFEDGRDTVEAMFRDVRLGRTVDTEAALPLVEAINDSVLRHPQALISVARLKTADDYTYL
HHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHH
HSMAVAGLMSGLARQLGLPEAQAVEAAMGGLLHDMGKAVTPLEILNKPGRLTTEEMDVMR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHH
QHPLDGHRLLVAGGVQNAVVLEISLHHHEKMDGSGYPHQLVGENISLMSRMGAVCDVYDA
HCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH
ISSDRPYKRGWDPAESLKQMASWKGHFDPAIFQAFVRRLGIYPVGSLVRLESQKLAVVIE
HCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHEECCCCEEEEEE
QTPDSLLKPKVRVFYSAKLRSHVLVQDIDLSRPDSQDRIVQMESPSEWGFRDLEKLWLP
CCCHHHHCCHHHEEEHHHHHHHHEEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MLRTIDSDQLRPGMYVDKLLGAWVHHPFWKTSFLVDSDDVDKIHDSRIEQLVIDTARGLD
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCE
VEVPANAGAHAEPDAPSSPEPAPAPAAPEPPEPAAKPRSVRTNSVTAQVGIEAEVLRARR
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
IFEDGRDTVEAMFRDVRLGRTVDTEAALPLVEAINDSVLRHPQALISVARLKTADDYTYL
HHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHH
HSMAVAGLMSGLARQLGLPEAQAVEAAMGGLLHDMGKAVTPLEILNKPGRLTTEEMDVMR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHH
QHPLDGHRLLVAGGVQNAVVLEISLHHHEKMDGSGYPHQLVGENISLMSRMGAVCDVYDA
HCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH
ISSDRPYKRGWDPAESLKQMASWKGHFDPAIFQAFVRRLGIYPVGSLVRLESQKLAVVIE
HCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHEECCCCEEEEEE
QTPDSLLKPKVRVFYSAKLRSHVLVQDIDLSRPDSQDRIVQMESPSEWGFRDLEKLWLP
CCCHHHHCCHHHEEEHHHHHHHHEEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]