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The map label for this gene is ydcJ [H]

Identifier: 84625617

GI number: 84625617

Start: 4465002

End: 4466369

Strand: Reverse

Name: ydcJ [H]

Synonym: XOO_3960

Alternate gene names: 84625617

Gene position: 4466369-4465002 (Counterclockwise)

Preceding gene: 84625618

Following gene: 84625613

Centisome position: 90.41

GC content: 66.15

Gene sequence:

>1368_bases
ATGCGCGATACCGCCTTTGTCTCTCCCGATCAGATCCGCAGCTGGTTCGCCCAGGCGATGTCGGACATGTATCGCTCCGA
GGTGCCGTTGTATGGCGATCTGATGTCGTTGGTGGCCCAGGTCAATGCGCAGACGCTGCAAGCCGATCCGGCGCTGGCGG
CACGGCTGCAGCGCAACGACGAGCGCGCGCGGCTGGATCTGGAACGGCATGGCGCCATCCGCGTTGGCACGGCGGCCGAA
CTGGCCACCTTGCGCCGGCTCTTCGCGGTGATGGGCATGCACCCAGTGGGCTATTACGACCTGTCGGTGGCCGGCGTGCC
GGTGCATTCCACCGCGTTCCGCCCGATCGACGAGGCGGCGCTGTCGGCCAACCCGTTTCGCGTGTTCACCTCGCTGCTGC
GGCTGGAGTTGATCGAAGACGCCACGCTGCGCGCACAGGCCGAGCAGATCCTGCAGCAGCGACAGATCTTTACCGCTGGC
GTCTTGCAGTTGATCGAGCGCTACGAACAGCAAGGTGGGCTGGATGCCGACCAGGCACGGCAGTTCGTAGCCGAGGCGCT
GGAAACCTTCCGCTGGCACGGCGATGCCACCGTGTCGCTGCCGACCTATCGCGCGCTGAGTCAGGCGCACAAGTTGATCG
CCGACGTGGTCAGTTTCCACGGCCCGCACATCAATCACCTCACGCCGCGCACGCTGGATATCGATGCGGCGCAGGAACAG
ATGCAACGTGCCCGCATCGATGCCAAGGCCGTGATCGAGGGGCCGCCGCGTCGGCGTGTACCGATCCTGTTGCGGCAGAC
CAGTTTCAAGGCGCTGGAAGAGGCGGTGCGTTTTGTCGGCGATGACGGGCAGCCGGAGCACGGCACGCATACCGCACGCT
TCGGCGAGATCGAGCAGCGCGGGCTTGCGCTGACACCCAAGGGTCGCGCGTTGTACGACGCGCTGCTGGCGCAGGCGCGC
GATGCCGACGGTGCCGGCAGCACGGGCACCGATTACGCCACCCGGCTGCAGACCGCCTTCGTGGCCTTCCCCGATGACGA
GGCGTTGCTGCGCCAGGAAGGGCTGGGGTATTTCCGCTATGCGCTCACCGACGCCGGCCGCGCCGACCCGGCGCAGGTGG
CCGCGATGCCGGCAGAAACCGCGATCGCGCTCGGCTTGGTCAGCGCCGACCCGATCATCTACGAAGATTTTTTGCCGGTC
AGTGCGGCCGGCATCTTCCAGTCCAACCTCGGTGGTGCCGAACAGCGCGCCTATGCCGCTCATTCGAGCAAGCGCAGTTT
CGAACACGCGCTAGGTGCGCAGGTGCACGACGAATTCGCGCTGTATGCGCAGTTGGAGCGCGAATCCTTGCAGGGCTTGC
TGGTGTAG

Upstream 100 bases:

>100_bases
CGTGGCCTGAGATGCTGCCGTGCAGCTGGCCGGCGCATGGCGCGGTCGGCGAGAATGCGACAACGCTGGCGTTCGGCCGG
CACTTAGCCAAGACCAGCCC

Downstream 100 bases:

>100_bases
CCGGCGCCACGCGCAGTGTTGCATTGCGCGCGGCCTCACCGGCGCGTGTCAGCCCGGCGCGCCGTTGCTGTGGAAGACCT
CCCACACACAGGTGGCCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MRDTAFVSPDQIRSWFAQAMSDMYRSEVPLYGDLMSLVAQVNAQTLQADPALAARLQRNDERARLDLERHGAIRVGTAAE
LATLRRLFAVMGMHPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDATLRAQAEQILQQRQIFTAG
VLQLIERYEQQGGLDADQARQFVAEALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
MQRARIDAKAVIEGPPRRRVPILLRQTSFKALEEAVRFVGDDGQPEHGTHTARFGEIEQRGLALTPKGRALYDALLAQAR
DADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPV
SAAGIFQSNLGGAEQRAYAAHSSKRSFEHALGAQVHDEFALYAQLERESLQGLLV

Sequences:

>Translated_455_residues
MRDTAFVSPDQIRSWFAQAMSDMYRSEVPLYGDLMSLVAQVNAQTLQADPALAARLQRNDERARLDLERHGAIRVGTAAE
LATLRRLFAVMGMHPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDATLRAQAEQILQQRQIFTAG
VLQLIERYEQQGGLDADQARQFVAEALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
MQRARIDAKAVIEGPPRRRVPILLRQTSFKALEEAVRFVGDDGQPEHGTHTARFGEIEQRGLALTPKGRALYDALLAQAR
DADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPV
SAAGIFQSNLGGAEQRAYAAHSSKRSFEHALGAQVHDEFALYAQLERESLQGLLV
>Mature_455_residues
MRDTAFVSPDQIRSWFAQAMSDMYRSEVPLYGDLMSLVAQVNAQTLQADPALAARLQRNDERARLDLERHGAIRVGTAAE
LATLRRLFAVMGMHPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDATLRAQAEQILQQRQIFTAG
VLQLIERYEQQGGLDADQARQFVAEALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
MQRARIDAKAVIEGPPRRRVPILLRQTSFKALEEAVRFVGDDGQPEHGTHTARFGEIEQRGLALTPKGRALYDALLAQAR
DADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPV
SAAGIFQSNLGGAEQRAYAAHSSKRSFEHALGAQVHDEFALYAQLERESLQGLLV

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=446, Percent_Identity=60.762331838565, Blast_Score=518, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 49999; Mature: 49999

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDTAFVSPDQIRSWFAQAMSDMYRSEVPLYGDLMSLVAQVNAQTLQADPALAARLQRND
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
ERARLDLERHGAIRVGTAAELATLRRLFAVMGMHPVGYYDLSVAGVPVHSTAFRPIDEAA
HHHHCCHHHCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHH
LSANPFRVFTSLLRLELIEDATLRAQAEQILQQRQIFTAGVLQLIERYEQQGGLDADQAR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QFVAEALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
HHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHH
MQRARIDAKAVIEGPPRRRVPILLRQTSFKALEEAVRFVGDDGQPEHGTHTARFGEIEQR
HHHHHCCHHHEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHC
GLALTPKGRALYDALLAQARDADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRY
CEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHCCCCHHHH
ALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPVSAAGIFQSNLGGAEQRAYAA
HHCCCCCCCHHHHHHCCHHHHHHHEECCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHH
HSSKRSFEHALGAQVHDEFALYAQLERESLQGLLV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRDTAFVSPDQIRSWFAQAMSDMYRSEVPLYGDLMSLVAQVNAQTLQADPALAARLQRND
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
ERARLDLERHGAIRVGTAAELATLRRLFAVMGMHPVGYYDLSVAGVPVHSTAFRPIDEAA
HHHHCCHHHCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHH
LSANPFRVFTSLLRLELIEDATLRAQAEQILQQRQIFTAGVLQLIERYEQQGGLDADQAR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QFVAEALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
HHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHH
MQRARIDAKAVIEGPPRRRVPILLRQTSFKALEEAVRFVGDDGQPEHGTHTARFGEIEQR
HHHHHCCHHHEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHC
GLALTPKGRALYDALLAQARDADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRY
CEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHCCCCHHHH
ALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPVSAAGIFQSNLGGAEQRAYAA
HHCCCCCCCHHHHHHCCHHHHHHHEECCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHH
HSSKRSFEHALGAQVHDEFALYAQLERESLQGLLV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]