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The map label for this gene is ymfC [C]

Identifier: 84625145

GI number: 84625145

Start: 3953273

End: 3954133

Strand: Reverse

Name: ymfC [C]

Synonym: XOO_3488

Alternate gene names: 84625145

Gene position: 3954133-3953273 (Counterclockwise)

Preceding gene: 84625146

Following gene: 84625142

Centisome position: 80.04

GC content: 67.94

Gene sequence:

>861_bases
ATGCCCCGGCGGCCACCGCCGGCAACGTCCCGGCAACGTCAGCGTGGTCCGGGAGCGGCAGGCGCAACGCGTGCCCACGT
TGCTGCACCCGCCAATGCCGCGCCACGCCATGGGCTGGCGCGCGTGTTGTCCAAGCTCGGTGTGTGTTCGCGCACCGAGG
CGGCGCGTTGGATCGCCGATGGCCGCGTCAGCGTCTCGGCACGCGTGGTGCGCGATCCCGAATTTCCAATCCGCGCCGAT
CAGCAATTCTCAATCACCGTCGACGGGCAGCCGCTGACAGGGCCGGCGCGTTGCTATTTGATGCTCAACAAGCCGCGCGG
CGTGGTCACTACCGTGCGCGATGAGCAGGGCAGGGACACGGTCTATCGCTGTTTCGATGGTGCCGGTTTGCCGTGGATCG
CCCCGGTCGGGCGCTTGGACAAGGCCAGCGAAGGCCTGCTGCTCTTCAGCAACGATCCGCAGTGGGCGGCGACGGTGACC
GACCCGGCGACCGGGCCGGACAAGACCTATCACGTGCAGATCGATTGCCTGCCTAATGTCGCGCAACTGGCGCAGCTGCA
GGCCGGTGTGGTCGACCCGGATCCTGAGGGCGAGGGTATGCTGTTGCGCGCCAAGCAGGTCAGCGTGCTGCGCGAAGGCG
AGCGCAATGCCTGGCTGGAAATCGTGCTGGACGAAGGCCGTAATCGGCAGATCCGCCGGCTATTGGCTGCCGTGGACATC
GGTGTGCTGCGGCTGATGCGCGTGGCGATCGGTCCGCTGGCGATGGGCGAGCTCGGCAAAGGCGCGTGGCGGATGCTGAG
TGCCGAAGAAGTCAGGGCGTTGGTACCGGCGGCGCACGCCAGCGCGCCAGACGCGCGCTGA

Upstream 100 bases:

>100_bases
AAGGCACGTCCGGCCGCTGGCGCGGCACCGGCAGCGCCCGCCGCACCTGCGGCCGACGCCAAGCCGGTCGAGAATAAGTA
AGCCGCGCGGTCGGGACGGC

Downstream 100 bases:

>100_bases
GCAGGGCGCTGACCACCTCGTAAGCGCGCGGGTCGCCGGCGCCGTTGGCATCGTGACGGCGGCCTTTGGCGTGATTGCAG
CCGGCGCAGGCCAGCGCCAG

Product: pseudouridylate synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MPRRPPPATSRQRQRGPGAAGATRAHVAAPANAAPRHGLARVLSKLGVCSRTEAARWIADGRVSVSARVVRDPEFPIRAD
QQFSITVDGQPLTGPARCYLMLNKPRGVVTTVRDEQGRDTVYRCFDGAGLPWIAPVGRLDKASEGLLLFSNDPQWAATVT
DPATGPDKTYHVQIDCLPNVAQLAQLQAGVVDPDPEGEGMLLRAKQVSVLREGERNAWLEIVLDEGRNRQIRRLLAAVDI
GVLRLMRVAIGPLAMGELGKGAWRMLSAEEVRALVPAAHASAPDAR

Sequences:

>Translated_286_residues
MPRRPPPATSRQRQRGPGAAGATRAHVAAPANAAPRHGLARVLSKLGVCSRTEAARWIADGRVSVSARVVRDPEFPIRAD
QQFSITVDGQPLTGPARCYLMLNKPRGVVTTVRDEQGRDTVYRCFDGAGLPWIAPVGRLDKASEGLLLFSNDPQWAATVT
DPATGPDKTYHVQIDCLPNVAQLAQLQAGVVDPDPEGEGMLLRAKQVSVLREGERNAWLEIVLDEGRNRQIRRLLAAVDI
GVLRLMRVAIGPLAMGELGKGAWRMLSAEEVRALVPAAHASAPDAR
>Mature_285_residues
PRRPPPATSRQRQRGPGAAGATRAHVAAPANAAPRHGLARVLSKLGVCSRTEAARWIADGRVSVSARVVRDPEFPIRADQ
QFSITVDGQPLTGPARCYLMLNKPRGVVTTVRDEQGRDTVYRCFDGAGLPWIAPVGRLDKASEGLLLFSNDPQWAATVTD
PATGPDKTYHVQIDCLPNVAQLAQLQAGVVDPDPEGEGMLLRAKQVSVLREGERNAWLEIVLDEGRNRQIRRLLAAVDIG
VLRLMRVAIGPLAMGELGKGAWRMLSAEEVRALVPAAHASAPDAR

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081838, Length=188, Percent_Identity=34.0425531914894, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788510, Length=247, Percent_Identity=30.7692307692308, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787524, Length=245, Percent_Identity=33.8775510204082, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790453, Length=252, Percent_Identity=26.984126984127, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30854; Mature: 30723

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRPPPATSRQRQRGPGAAGATRAHVAAPANAAPRHGLARVLSKLGVCSRTEAARWIAD
CCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHC
GRVSVSARVVRDPEFPIRADQQFSITVDGQPLTGPARCYLMLNKPRGVVTTVRDEQGRDT
CCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCCH
VYRCFDGAGLPWIAPVGRLDKASEGLLLFSNDPQWAATVTDPATGPDKTYHVQIDCLPNV
HHHEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCH
AQLAQLQAGVVDPDPEGEGMLLRAKQVSVLREGERNAWLEIVLDEGRNRQIRRLLAAVDI
HHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHH
GVLRLMRVAIGPLAMGELGKGAWRMLSAEEVRALVPAAHASAPDAR
HHHHHHHHHHCCHHHHHCCCHHHHHCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PRRPPPATSRQRQRGPGAAGATRAHVAAPANAAPRHGLARVLSKLGVCSRTEAARWIAD
CCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHC
GRVSVSARVVRDPEFPIRADQQFSITVDGQPLTGPARCYLMLNKPRGVVTTVRDEQGRDT
CCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCCH
VYRCFDGAGLPWIAPVGRLDKASEGLLLFSNDPQWAATVTDPATGPDKTYHVQIDCLPNV
HHHEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCH
AQLAQLQAGVVDPDPEGEGMLLRAKQVSVLREGERNAWLEIVLDEGRNRQIRRLLAAVDI
HHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHH
GVLRLMRVAIGPLAMGELGKGAWRMLSAEEVRALVPAAHASAPDAR
HHHHHHHHHHCCHHHHHCCCHHHHHCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA