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The map label for this gene is yiaD [C]

Identifier: 84624974

GI number: 84624974

Start: 3779427

End: 3780227

Strand: Reverse

Name: yiaD [C]

Synonym: XOO_3317

Alternate gene names: 84624974

Gene position: 3780227-3779427 (Counterclockwise)

Preceding gene: 84624975

Following gene: 84624972

Centisome position: 76.52

GC content: 65.79

Gene sequence:

>801_bases
ATGCGACACCTGAGTGCCAAAACCCTCGCCCTGAGTGGCCTGATAACCGCGTTCGCCTCCTCCGCCCAGGTCGCCGCGCC
TGCCGCCACGCCTGCCACTGGCGGTGTCGGCGAACGCCCGGTGATCGTGGAGGGCGTGGTGCCGGATCAGGCCACCAAGG
CCCGCATCCTGAATAACCTGCGTGACACCTACGGCAGTGCCCGCATCGTCGATCGGGTGCAGGTCGAGTCGATTCCCTCG
CCGCCGAACTGGGGCGAGTACGTCGCCAAGATGGTGTCGCCAGGACTCAAGCGCGTGGCTGCAGGCAAGCTCGAGGTCAA
CGGCCAGGCGGTGCGGATCAGCGGGCAGGTAGTCAACGAAGCGCAGCGGCAACAGGTCGCCAGTGACCTTAGCCTGGCCA
GCAACACCTCCTACACGGTGACCAACAGCCTCAAGCTCGGCGGCTCGGAACAGGGCGTGCTGGACCAGACGCTGGGCAAC
CGCATCATCGAGTTCCAGAGTGGCAGCTCGCGGCTGACGCCGCTGGGCATGCGCATCCTCGACGAGATGGTGGAAAAGAT
GTCGCAGATGAAGGACGCGCGCTTCCTGATCATCGGCCACACCGACAATGTCGGCCAACGCGAGAGCAACCTCGCGCTGA
GCCAGGCGCGCGCGCAGGCGGTGAAGGACTACATAGTGCAGAAGGGCATCGACGGTGCGCGCATGAACGTGCAGGGCAAG
GGCCCCGACCAACCGGTGGCCGATAACGCCAGCCCGGACGGGCGTGCGCGCAACCGGCGTATCCAGTTCAAGATCCAGTA
G

Upstream 100 bases:

>100_bases
ATTACAACCTCAACAAGCTAGCCAGCTATCTGGATCGGGACGACCTGGCGTTGAAGACGGCCCGCAAGTTGTTCGGCGAG
ACTTTCCTGGGGACATGAAT

Downstream 100 bases:

>100_bases
GCGCCTGTGAGGCCGTCCCGCGCGACGCGCGGGGACGGGGCGGGTTCGTAACCTACTGCTCCAGGTTCTGGTTGACGTCC
AGCATCTCTTCCATCTGGTT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRHLSAKTLALSGLITAFASSAQVAAPAATPATGGVGERPVIVEGVVPDQATKARILNNLRDTYGSARIVDRVQVESIPS
PPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNEAQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGN
RIIEFQSGSSRLTPLGMRILDEMVEKMSQMKDARFLIIGHTDNVGQRESNLALSQARAQAVKDYIVQKGIDGARMNVQGK
GPDQPVADNASPDGRARNRRIQFKIQ

Sequences:

>Translated_266_residues
MRHLSAKTLALSGLITAFASSAQVAAPAATPATGGVGERPVIVEGVVPDQATKARILNNLRDTYGSARIVDRVQVESIPS
PPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNEAQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGN
RIIEFQSGSSRLTPLGMRILDEMVEKMSQMKDARFLIIGHTDNVGQRESNLALSQARAQAVKDYIVQKGIDGARMNVQGK
GPDQPVADNASPDGRARNRRIQFKIQ
>Mature_266_residues
MRHLSAKTLALSGLITAFASSAQVAAPAATPATGGVGERPVIVEGVVPDQATKARILNNLRDTYGSARIVDRVQVESIPS
PPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNEAQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGN
RIIEFQSGSSRLTPLGMRILDEMVEKMSQMKDARFLIIGHTDNVGQRESNLALSQARAQAVKDYIVQKGIDGARMNVQGK
GPDQPVADNASPDGRARNRRIQFKIQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=103, Percent_Identity=33.0097087378641, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787191, Length=115, Percent_Identity=29.5652173913043, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 28427; Mature: 28427

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHLSAKTLALSGLITAFASSAQVAAPAATPATGGVGERPVIVEGVVPDQATKARILNNL
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE
HHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHCCEEEECCEEEEEEHHHHHH
AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIEFQSGSSRLTPLGMRIL
HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHH
DEMVEKMSQMKDARFLIIGHTDNVGQRESNLALSQARAQAVKDYIVQKGIDGARMNVQGK
HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
GPDQPVADNASPDGRARNRRIQFKIQ
CCCCCCCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MRHLSAKTLALSGLITAFASSAQVAAPAATPATGGVGERPVIVEGVVPDQATKARILNNL
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE
HHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHCCEEEECCEEEEEEHHHHHH
AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIEFQSGSSRLTPLGMRIL
HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHH
DEMVEKMSQMKDARFLIIGHTDNVGQRESNLALSQARAQAVKDYIVQKGIDGARMNVQGK
HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
GPDQPVADNASPDGRARNRRIQFKIQ
CCCCCCCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]