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The map label for this gene is 84624949

Identifier: 84624949

GI number: 84624949

Start: 3745291

End: 3745788

Strand: Reverse

Name: 84624949

Synonym: XOO_3292

Alternate gene names: NA

Gene position: 3745788-3745291 (Counterclockwise)

Preceding gene: 84624950

Following gene: 84624948

Centisome position: 75.82

GC content: 59.44

Gene sequence:

>498_bases
ATGCAGCACGCGTTTCTTTCTATCGATACCATCAAGGGTGAATCGCACGACGACAAGCACACGGACTGGGTGGAGATCAA
GTCGTTCTCCCAGGACTTGTTGCAGCCGCGCTCGGCCACCGCATCCACCGCTGGCGGTCAGTCGGCCGCTCGTGTAAACC
TGTCGCCGATCGAGATCGTCAAGTCGATCGATCTGTCCACCACCGCGCTGAATCAGGCGTGCGCCAACGGCACCACCTTC
CCCAAAGCCCGCATCGAGTTCATGCGCGCCGACAAGGACGGTAATGCCATCAACTACTACCTGGTTGAGTTGATGAACGT
GCTGGTACACCGCGTCACCACGACGGTGGACGAGGACGGCATGCCGCAAGAAGTCGTCCAGCTGAGCTTCGGCGCGATCA
AGTGGACCTACAACCAGCAGAAGCCGGAAGGCGGAGTCGGCGGCAAGGCGGTTGCGCAGTGGAGTGCTACCAAGAACATT
CCCAACTACACCGTTTGA

Upstream 100 bases:

>100_bases
GTTTTGCAGTTGACGCAATGTCCTTCGGGACAGGCAAATAACCGCCAGGCCCTGCCTGGCACATCAATCTCACGGAAGAC
CGGAATTTAGGAGACCAGAT

Downstream 100 bases:

>100_bases
TGTTTGTTTTGCGATGGCGCCTTCGCGCGTCATCGCATTTCCGCGCCGCGCGCCGACACAGGACCGACGCATAGCGGGGC
CGCGCCATCCGCTGGTCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Hemolysin-Coregulated Protein; Type VI Secretion System Effector Hcp1 Family; Virulence Factor For Secretion Apparatus; Type VI Secretion System Effector Hcp1 Family Protein; Hcp Family T6SS H; Type VI Secretion System Protein; Secretion System Protein Hemolysin-Coregulated Protein; Type VI Secretion System Effector Protein Hcp; SciM Protein

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIVKSIDLSTTALNQACANGTTF
PKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDGMPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNI
PNYTV

Sequences:

>Translated_165_residues
MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIVKSIDLSTTALNQACANGTTF
PKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDGMPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNI
PNYTV
>Mature_165_residues
MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIVKSIDLSTTALNQACANGTTF
PKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDGMPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNI
PNYTV

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18056; Mature: 18056

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIV
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCHHHHH
KSIDLSTTALNQACANGTTFPKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDG
HHCCCHHHHHHHHHCCCCCCCHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
MPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNIPNYTV
CHHHHHHHHHCEEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCC
>Mature Secondary Structure
MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIV
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCHHHHH
KSIDLSTTALNQACANGTTFPKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDG
HHCCCHHHHHHHHHCCCCCCCHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
MPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNIPNYTV
CHHHHHHHHHCEEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA