Click here to switch to the map view.

The map label for this gene is 84624947

Identifier: 84624947

GI number: 84624947

Start: 3742817

End: 3744652

Strand: Reverse

Name: 84624947

Synonym: XOO_3290

Alternate gene names: NA

Gene position: 3744652-3742817 (Counterclockwise)

Preceding gene: 84624948

Following gene: 84624946

Centisome position: 75.8

GC content: 65.9

Gene sequence:

>1836_bases
ATGCAAGACCTGCTTCCCTACTACGAACGCGAACTGGGCTATCTGCGTCGCTACGGGCGCGAGTTCGCCGAGCGCTATCC
CAAGATTGCCGGGCGCCTGCAGCTGTCGGCCGACGGCAGCCAGGATCCGCATGTCGAGCGCCTGATCGAGGCGTTCGCGC
TGATGGGCGCGCGCATCTCCAAGCGCATTGAGGACGACTACCCCGAGTTCACCGACGCGCTGCTGGAAGTGCTGTATCCG
CACTATCTGCGGCCGTTTCCGTCCTGCTCCATCGCCTATTTCGACATGGAAGGCGTGGCTGCCAAGCTCAGCGCGCCGAT
CCGCGTGCCGCGCGGCAGCTACTTGCAGTCGCGCCCGGTGCGCGGGATCAATTGCCGGTTCCGCACCGCCTACGACGTGG
TACTGGTGCCGGTGGCGGTGAAGGCCGCCAGCTACCGCGGCGTGGCCGATGCGCCGATGGCGGTCAGCCTGCCGCCGGGC
ACCGGCGCACAGATCTCGATCAGCTTCGAGCTGTTGTCCGACCAGGCCTCGTTCGCTGGCCTGGGCACCGACGCGCTGCG
TTTCTTCGTCGACGGCGAGCCGTCGTTTTGCTCGGCGATGCGCGATGCGCTGGCGCTGGGGGTCAAGGCGGCCTATGTCG
AGTCCGACGGCAGCGGACGCTGGCGCCGGCTGGCGGACACCCCGCTGGTGCCAGTGGGATTCGCCGACGACGAATCGCTG
ATCGATTTCCCGGCGCGTTCGCACCCGGCCTACCGCCTGCTGACCGAGCTGTTCGGCTACCCGGACAAGTTCGGCTTCTT
CGATCTTCAGCTCAAGCCGGTGACCGCCGGCGCCAGCCGCTGGTTCACGTTGCACCTGGTCCTACACGCGACGCCGCCCG
ATCGCGCCGCCAACCAAGTGCTCGAGGAGTTGGATTGCAAGAACATCCGCCTGGGCTGCACCCCGGTGGTGAACCTGTTC
GCGCAGCACGGCGAGCCGATCCGCGTCACCCATCGCAGCGTCACCTATCCGGTGATCGCCGACGGGCGCCGCGCCTTTGC
CTACGAAGTGCATTCGATCGATTCGGTACACCGTATCCGGCAGACTCCGCAGGGCGAGCTAATCCAGGAGTTCCGCCCGT
TCTATTCGCTGCACCATGGCGAAGACCCCGAGCGCGCCGGCCAGTATTGGGTGGCGCGGCGCGACGAGGATGTGGCGCGG
CAGAGTCCCGGTTACGAAACCGAAGTGAGCTTCGTGGACCTGGAATTCAATCCGACCCTGCCGCAGACCGATGTGGTCAG
CGTCGAACTCACCTGCAGCAATCGCGATCTGCCCAGCCAGCTCGCCTATGGCATCGCCGGAGGCGACCTGTCGATCGAGG
GCGGAACGCCGGCGCGCGCGATCAGCCTGTTGCGCAAGCCGAGCCGGCCACTGCGGTTCCGCCACGGGCGCGGCGCGCAA
TGGCGGCTGATCTCGCACCTGTCGTTGAATCAGCTGTCGCTGACCGGCAGCGGCTTGCCGGCGTTGAAGGAGATGCTGCG
GCTGTACGACATCTCCGGCAGCAGCGTGTCGTCGCGGCAGATCGACGGCATCGTCGGCATCGAGCAGTATCCGGTCACCA
CCTGGCTGTCCGGCAAGCATTTCGCATCGGTGGTGCGCGGCCTGGAAGTGCGTTTGACCATCAGCGAAAACCATTTCGTC
GGGACCGGCGTGGCCGCGTTCGCGCATGTGCTCGACCACTTCTTCGGCCTCTACGTCCACGCCAACAGCTTTATCCAGCT
GGTGCTCATTTCCAGCGACACAGGGGAGGAACTCGTCCGATGCTTACCGCGAAGCGGCGAATCGATCCTGGCATAG

Upstream 100 bases:

>100_bases
TGGAGCCGGCGCGCGAGCCGGTGAGCTTCGACGCCATGCTGCAACCGTCCACCCTGCAGTACTCGGTCAGCCGCCTGCGG
CGCCAGGCAGCGCCCTGACC

Downstream 100 bases:

>100_bases
CGCTGCAACTGCTGGCCGAGCCGCATCGCTTCCAGTTTTTCCAGGCGATGCGGATTCTGGAGCGGGTGTTCCAGCGCCAG
GGGGTCAAGGCCGGTCAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; T6ss C; Type VI Secretion System; Type VI Secretion System Protein EvpF; Type VI Secretion System Protein; Type VI Secretion Protein VasA; Type VI Secretion; Type VI Secretion System Core Protein; Protein ImpG; Cytoplasmic Protein SciC; Type VI Secretion System Protein ImpG; Conserved Protein; Protein ImpG/VasA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MQDLLPYYERELGYLRRYGREFAERYPKIAGRLQLSADGSQDPHVERLIEAFALMGARISKRIEDDYPEFTDALLEVLYP
HYLRPFPSCSIAYFDMEGVAAKLSAPIRVPRGSYLQSRPVRGINCRFRTAYDVVLVPVAVKAASYRGVADAPMAVSLPPG
TGAQISISFELLSDQASFAGLGTDALRFFVDGEPSFCSAMRDALALGVKAAYVESDGSGRWRRLADTPLVPVGFADDESL
IDFPARSHPAYRLLTELFGYPDKFGFFDLQLKPVTAGASRWFTLHLVLHATPPDRAANQVLEELDCKNIRLGCTPVVNLF
AQHGEPIRVTHRSVTYPVIADGRRAFAYEVHSIDSVHRIRQTPQGELIQEFRPFYSLHHGEDPERAGQYWVARRDEDVAR
QSPGYETEVSFVDLEFNPTLPQTDVVSVELTCSNRDLPSQLAYGIAGGDLSIEGGTPARAISLLRKPSRPLRFRHGRGAQ
WRLISHLSLNQLSLTGSGLPALKEMLRLYDISGSSVSSRQIDGIVGIEQYPVTTWLSGKHFASVVRGLEVRLTISENHFV
GTGVAAFAHVLDHFFGLYVHANSFIQLVLISSDTGEELVRCLPRSGESILA

Sequences:

>Translated_611_residues
MQDLLPYYERELGYLRRYGREFAERYPKIAGRLQLSADGSQDPHVERLIEAFALMGARISKRIEDDYPEFTDALLEVLYP
HYLRPFPSCSIAYFDMEGVAAKLSAPIRVPRGSYLQSRPVRGINCRFRTAYDVVLVPVAVKAASYRGVADAPMAVSLPPG
TGAQISISFELLSDQASFAGLGTDALRFFVDGEPSFCSAMRDALALGVKAAYVESDGSGRWRRLADTPLVPVGFADDESL
IDFPARSHPAYRLLTELFGYPDKFGFFDLQLKPVTAGASRWFTLHLVLHATPPDRAANQVLEELDCKNIRLGCTPVVNLF
AQHGEPIRVTHRSVTYPVIADGRRAFAYEVHSIDSVHRIRQTPQGELIQEFRPFYSLHHGEDPERAGQYWVARRDEDVAR
QSPGYETEVSFVDLEFNPTLPQTDVVSVELTCSNRDLPSQLAYGIAGGDLSIEGGTPARAISLLRKPSRPLRFRHGRGAQ
WRLISHLSLNQLSLTGSGLPALKEMLRLYDISGSSVSSRQIDGIVGIEQYPVTTWLSGKHFASVVRGLEVRLTISENHFV
GTGVAAFAHVLDHFFGLYVHANSFIQLVLISSDTGEELVRCLPRSGESILA
>Mature_611_residues
MQDLLPYYERELGYLRRYGREFAERYPKIAGRLQLSADGSQDPHVERLIEAFALMGARISKRIEDDYPEFTDALLEVLYP
HYLRPFPSCSIAYFDMEGVAAKLSAPIRVPRGSYLQSRPVRGINCRFRTAYDVVLVPVAVKAASYRGVADAPMAVSLPPG
TGAQISISFELLSDQASFAGLGTDALRFFVDGEPSFCSAMRDALALGVKAAYVESDGSGRWRRLADTPLVPVGFADDESL
IDFPARSHPAYRLLTELFGYPDKFGFFDLQLKPVTAGASRWFTLHLVLHATPPDRAANQVLEELDCKNIRLGCTPVVNLF
AQHGEPIRVTHRSVTYPVIADGRRAFAYEVHSIDSVHRIRQTPQGELIQEFRPFYSLHHGEDPERAGQYWVARRDEDVAR
QSPGYETEVSFVDLEFNPTLPQTDVVSVELTCSNRDLPSQLAYGIAGGDLSIEGGTPARAISLLRKPSRPLRFRHGRGAQ
WRLISHLSLNQLSLTGSGLPALKEMLRLYDISGSSVSSRQIDGIVGIEQYPVTTWLSGKHFASVVRGLEVRLTISENHFV
GTGVAAFAHVLDHFFGLYVHANSFIQLVLISSDTGEELVRCLPRSGESILA

Specific function: Unknown

COG id: COG3519

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67801; Mature: 67801

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLLPYYERELGYLRRYGREFAERYPKIAGRLQLSADGSQDPHVERLIEAFALMGARIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
KRIEDDYPEFTDALLEVLYPHYLRPFPSCSIAYFDMEGVAAKLSAPIRVPRGSYLQSRPV
HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCEECCCCCCHHCCCC
RGINCRFRTAYDVVLVPVAVKAASYRGVADAPMAVSLPPGTGAQISISFELLSDQASFAG
CCCCEEEEEEEEEEEEEEHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCHHCC
LGTDALRFFVDGEPSFCSAMRDALALGVKAAYVESDGSGRWRRLADTPLVPVGFADDESL
CCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCCCEEEECCCCCCC
IDFPARSHPAYRLLTELFGYPDKFGFFDLQLKPVTAGASRWFTLHLVLHATPPDRAANQV
CCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCHHHHHH
LEELDCKNIRLGCTPVVNLFAQHGEPIRVTHRSVTYPVIADGRRAFAYEVHSIDSVHRIR
HHHCCCCCEEECCHHHHHHHHHCCCCEEEEECEEEEEEEECCCEEEEEEHHHHHHHHHHH
QTPQGELIQEFRPFYSLHHGEDPERAGQYWVARRDEDVARQSPGYETEVSFVDLEFNPTL
CCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEECCCHHHHHCCCCCCCEEEEEEEEECCCC
PQTDVVSVELTCSNRDLPSQLAYGIAGGDLSIEGGTPARAISLLRKPSRPLRFRHGRGAQ
CCCCEEEEEEEECCCCCHHHHHHEECCCCEEECCCCHHHHHHHHHCCCCCCEEECCCCCC
WRLISHLSLNQLSLTGSGLPALKEMLRLYDISGSSVSSRQIDGIVGIEQYPVTTWLSGKH
EEEEEECCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEECCHH
FASVVRGLEVRLTISENHFVGTGVAAFAHVLDHFFGLYVHANSFIQLVLISSDTGEELVR
HHHHHCCEEEEEEEECCCEEECHHHHHHHHHHHHHHHHEEECCEEEEEEEECCCHHHHHH
CLPRSGESILA
HCCCCCCCCCC
>Mature Secondary Structure
MQDLLPYYERELGYLRRYGREFAERYPKIAGRLQLSADGSQDPHVERLIEAFALMGARIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
KRIEDDYPEFTDALLEVLYPHYLRPFPSCSIAYFDMEGVAAKLSAPIRVPRGSYLQSRPV
HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCEECCCCCCHHCCCC
RGINCRFRTAYDVVLVPVAVKAASYRGVADAPMAVSLPPGTGAQISISFELLSDQASFAG
CCCCEEEEEEEEEEEEEEHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCHHCC
LGTDALRFFVDGEPSFCSAMRDALALGVKAAYVESDGSGRWRRLADTPLVPVGFADDESL
CCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCCCEEEECCCCCCC
IDFPARSHPAYRLLTELFGYPDKFGFFDLQLKPVTAGASRWFTLHLVLHATPPDRAANQV
CCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCHHHHHH
LEELDCKNIRLGCTPVVNLFAQHGEPIRVTHRSVTYPVIADGRRAFAYEVHSIDSVHRIR
HHHCCCCCEEECCHHHHHHHHHCCCCEEEEECEEEEEEEECCCEEEEEEHHHHHHHHHHH
QTPQGELIQEFRPFYSLHHGEDPERAGQYWVARRDEDVARQSPGYETEVSFVDLEFNPTL
CCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEECCCHHHHHCCCCCCCEEEEEEEEECCCC
PQTDVVSVELTCSNRDLPSQLAYGIAGGDLSIEGGTPARAISLLRKPSRPLRFRHGRGAQ
CCCCEEEEEEEECCCCCHHHHHHEECCCCEEECCCCHHHHHHHHHCCCCCCEEECCCCCC
WRLISHLSLNQLSLTGSGLPALKEMLRLYDISGSSVSSRQIDGIVGIEQYPVTTWLSGKH
EEEEEECCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEECCHH
FASVVRGLEVRLTISENHFVGTGVAAFAHVLDHFFGLYVHANSFIQLVLISSDTGEELVR
HHHHHCCEEEEEEEECCCEEECHHHHHHHHHHHHHHHHEEECCEEEEEEEECCCHHHHHH
CLPRSGESILA
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA