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The map label for this gene is rpoE [H]

Identifier: 84624511

GI number: 84624511

Start: 3205708

End: 3206289

Strand: Direct

Name: rpoE [H]

Synonym: XOO_2854

Alternate gene names: 84624511

Gene position: 3205708-3206289 (Clockwise)

Preceding gene: 84624510

Following gene: 84624512

Centisome position: 64.89

GC content: 64.95

Gene sequence:

>582_bases
ATGAATGACACCGACACCCTGGGCGATGCCACCGACCGCATGCTGTTGCGCCGCATGGCTGCGGGCGATCGCGACGCATT
GGCGAGCATGTACCAAAACTACCACAGCCGCCTGTGCCGGTTCCTGTCGCGGCTGACCCGCCGCCCGGACATCATCGAAG
AGGCCATCAACGATTGCTTCTGGATCGCCTGGCAGAAAGCCGGCGACTTCCGCGGCGATTCGCAGGTGTCCACCTGGATC
ATGGGCATCGCCTACCGCTGCGGGCTCAAGTGCCTGCGCCAGCATGATGGCGAGGCCATCGACGACACCGCTGTGGTGGA
AGACCACGCCCCCAGCGCCGACGACAACGACGACCGCGAACTGCGCGACTGGCTGGACAAGGGCATGGAACGATTGTCGC
CGGAGCAGCGCCTGGTGATCGAGCTGGTCTACGGCGTCGGCCACAAGCTCGAAGAGGTGGCCGACATCATGCAGTGCCCG
GTCGGCACCATCAAAGCCCGGCTGTTCCACGCCCGGGTCAAATTACGCAATGTGCTGCCCGGCCTGGCCGGCGGCGCCCC
TTACACGGAGACCATGCAATGA

Upstream 100 bases:

>100_bases
AACACCGTGGCTGGGCACGGTCTCCAGAACCTTCTGATCCATACGCAACCTTTTGCCTACCGACGCGCACTGACGTGCGT
TACCTGCCATGCCTGCCTTG

Downstream 100 bases:

>100_bases
AGACGTTTTTCATCGCGCCTGGCAAGGAATGCTCGCACGCCTGGGAATTGATGCCGGCGGTCCTGTTGGACAGTGCCACC
GAGGAAGAAAACACCTGGCT

Product: RNA polymerase sigma-E factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MNDTDTLGDATDRMLLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDSQVSTWI
MGIAYRCGLKCLRQHDGEAIDDTAVVEDHAPSADDNDDRELRDWLDKGMERLSPEQRLVIELVYGVGHKLEEVADIMQCP
VGTIKARLFHARVKLRNVLPGLAGGAPYTETMQ

Sequences:

>Translated_193_residues
MNDTDTLGDATDRMLLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDSQVSTWI
MGIAYRCGLKCLRQHDGEAIDDTAVVEDHAPSADDNDDRELRDWLDKGMERLSPEQRLVIELVYGVGHKLEEVADIMQCP
VGTIKARLFHARVKLRNVLPGLAGGAPYTETMQ
>Mature_193_residues
MNDTDTLGDATDRMLLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDSQVSTWI
MGIAYRCGLKCLRQHDGEAIDDTAVVEDHAPSADDNDDRELRDWLDKGMERLSPEQRLVIELVYGVGHKLEEVADIMQCP
VGTIKARLFHARVKLRNVLPGLAGGAPYTETMQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=182, Percent_Identity=30.2197802197802, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21913; Mature: 21913

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTDTLGDATDRMLLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCF
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
WIAWQKAGDFRGDSQVSTWIMGIAYRCGLKCLRQHDGEAIDDTAVVEDHAPSADDNDDRE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHH
LRDWLDKGMERLSPEQRLVIELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLP
HHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
GLAGGAPYTETMQ
CCCCCCCCHHCCC
>Mature Secondary Structure
MNDTDTLGDATDRMLLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCF
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
WIAWQKAGDFRGDSQVSTWIMGIAYRCGLKCLRQHDGEAIDDTAVVEDHAPSADDNDDRE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHH
LRDWLDKGMERLSPEQRLVIELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLP
HHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
GLAGGAPYTETMQ
CCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]