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The map label for this gene is rnaSA3 [H]

Identifier: 84624215

GI number: 84624215

Start: 2851102

End: 2851542

Strand: Direct

Name: rnaSA3 [H]

Synonym: XOO_2558

Alternate gene names: 84624215

Gene position: 2851102-2851542 (Clockwise)

Preceding gene: 84624213

Following gene: 84624216

Centisome position: 57.71

GC content: 68.03

Gene sequence:

>441_bases
ATGCGTAAGCCCGCGTTGCTCATTGTCGCCATCGCGCTGCTCGTCGCCGGGCTGTGGGGCATGCGCGCAATGCAGACGCC
CAAGCCGCAGTTCGCGCCGCAACTCAACGCACCGAGCACCGCGACCGCACCGACGCGCGAGGTGCCGCGTCTGCCCGCCT
TTCTGCCGACCGAGGCGATGGCCGCGATCGTGCTGATCCAGCACGGCGGGCCGTTCCCGCATCCACAGGACGGCGGCGTG
TTCGGCAACCGCGAGCATCGCCTGCCCGAGCGCCCGCGTGGTTATTACCGCGAATACACCGTGGATACGCCCGGCAGTCC
GGATCGCGGCGCACGCCGCATCGTCACCGGCGGTACCCCGCCCGAGGCGTGGTACTACAGCGACGATCATTACCAAAGCT
TCAAAGCCTTCAATGGCGCCACCCCGGATCAGGCACCATGA

Upstream 100 bases:

>100_bases
ACTTGGGCGTGAACCGCGCTGGCGCTTGGCCACGTTCAAAGTCGACACAGTCACGCATCGGCATACTTGCTCTGCCGTAG
CCATTCTTCGGACCGTCTTC

Downstream 100 bases:

>100_bases
GCGCAGGCGACTTCGCACTGGATCTGTCCGATCCGCAGCAATCAGGCGTCTATCAGGCCGAGACCGACGATCTGGACACG
ATGGCGGCACTGGCACGCGA

Product: ribonuclease

Products: NA

Alternate protein names: RNase Sa3 [H]

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MRKPALLIVAIALLVAGLWGMRAMQTPKPQFAPQLNAPSTATAPTREVPRLPAFLPTEAMAAIVLIQHGGPFPHPQDGGV
FGNREHRLPERPRGYYREYTVDTPGSPDRGARRIVTGGTPPEAWYYSDDHYQSFKAFNGATPDQAP

Sequences:

>Translated_146_residues
MRKPALLIVAIALLVAGLWGMRAMQTPKPQFAPQLNAPSTATAPTREVPRLPAFLPTEAMAAIVLIQHGGPFPHPQDGGV
FGNREHRLPERPRGYYREYTVDTPGSPDRGARRIVTGGTPPEAWYYSDDHYQSFKAFNGATPDQAP
>Mature_146_residues
MRKPALLIVAIALLVAGLWGMRAMQTPKPQFAPQLNAPSTATAPTREVPRLPAFLPTEAMAAIVLIQHGGPFPHPQDGGV
FGNREHRLPERPRGYYREYTVDTPGSPDRGARRIVTGGTPPEAWYYSDDHYQSFKAFNGATPDQAP

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 16003; Mature: 16003

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPALLIVAIALLVAGLWGMRAMQTPKPQFAPQLNAPSTATAPTREVPRLPAFLPTEAM
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
AAIVLIQHGGPFPHPQDGGVFGNREHRLPERPRGYYREYTVDTPGSPDRGARRIVTGGTP
EEEEHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCC
PEAWYYSDDHYQSFKAFNGATPDQAP
CCCEEECCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRKPALLIVAIALLVAGLWGMRAMQTPKPQFAPQLNAPSTATAPTREVPRLPAFLPTEAM
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
AAIVLIQHGGPFPHPQDGGVFGNREHRLPERPRGYYREYTVDTPGSPDRGARRIVTGGTP
EEEEHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCC
PEAWYYSDDHYQSFKAFNGATPDQAP
CCCEEECCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1398084 [H]