BacMap

Definition	Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome.
Accession	NC_007705
Length	4,940,217

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The map label for this gene is ykvO [H]

Identifier: 84624109

GI number: 84624109

Start: 2724178

End: 2724930

Strand: Direct

Name: ykvO [H]

Synonym: XOO_2452

Alternate gene names: 84624109

Gene position: 2724178-2724930 (Clockwise)

Preceding gene: 84624108

Following gene: 84624110

Centisome position: 55.14

GC content: 62.68

Gene sequence:

>753_bases
ATGAGCAATGCGACTCGTAAAGCCTTTTTCCTAGAGGGCAAGACCATCCTGGTCACCGGCGCATCGTCCGGCCTTGGCCA
GGAAATCGCACTGACCTGCGCACGACGCGGCGCGCGCTTGGTTATCAGTGGCCGCGATCCCGAGCGTCTCCAGCAAACCC
ATGCGCAACTGGCCGGCAACGGGCATGTGCAGGTGCAGGCCGACCTGACTGTTTCGGAGGACCGAGAGCGCCTGGTGCAA
GCCAGCCAGCGCATCGACGGTGTCGTGCACTGCTTCGGCGGGCAGATGCTGTCTCCGATTCGCCAGCTGAAGGAAGAGCT
GATGACGCGCATGTATCAGGTGCATTTCCTGGCGCCGGTCATGCTGACGCAGCGTCTGCTGCAAGCCAATGCCATTAATG
CACAAGGCTCCATCCTGTTCATGCTGTCCACCTCCGCGCATATTGGGACACGCGGCGTGGGGCCGTACTCGGCAATGAAG
TCCGGCCTGCTGGGCATCATCCGATGCTTAGCGTTGGAACAAGCCAAGCACCGCATCAGAGTCAACGGTATCTCGCCATC
GGCCGTGCCCACTCCGCGCCTCTGGGGTGAAGACAACGGGCTCAACGAAATGCTGAACCAACAACGCGCGCGCCATCCAC
TAGGGCTGGGCACCCCGCACGATGTCGCCAACGCTGCGGTCTACCTGCTGGCCGACGCCAGCCGTTGGGTCACCGGCACC
AGTTTGGTCATGGACGGCGGGGCGGTGCTCTGA

Upstream 100 bases:

>100_bases
CTTACGCGGCGGTGTTTTATCTATCCGACGCCAGTCGCTGGGTCACCCGCAACTACTTCCTCGTAGATGGTGGCCTGACC
GTGCCGATGGACGTCTACGC

Downstream 100 bases:

>100_bases
TGGAACGCGCACTCATTATCGGCGCCAGCGGCTGGGGCCGCGAAGTCCTGGAGCAAATGCGTGGCGATGCCGGGCATGGC
AAGGATTGGCTGATTGGCGG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSNATRKAFFLEGKTILVTGASSGLGQEIALTCARRGARLVISGRDPERLQQTHAQLAGNGHVQVQADLTVSEDRERLVQ
ASQRIDGVVHCFGGQMLSPIRQLKEELMTRMYQVHFLAPVMLTQRLLQANAINAQGSILFMLSTSAHIGTRGVGPYSAMK
SGLLGIIRCLALEQAKHRIRVNGISPSAVPTPRLWGEDNGLNEMLNQQRARHPLGLGTPHDVANAAVYLLADASRWVTGT
SLVMDGGAVL

Sequences:

>Translated_250_residues
MSNATRKAFFLEGKTILVTGASSGLGQEIALTCARRGARLVISGRDPERLQQTHAQLAGNGHVQVQADLTVSEDRERLVQ
ASQRIDGVVHCFGGQMLSPIRQLKEELMTRMYQVHFLAPVMLTQRLLQANAINAQGSILFMLSTSAHIGTRGVGPYSAMK
SGLLGIIRCLALEQAKHRIRVNGISPSAVPTPRLWGEDNGLNEMLNQQRARHPLGLGTPHDVANAAVYLLADASRWVTGT
SLVMDGGAVL
>Mature_249_residues
SNATRKAFFLEGKTILVTGASSGLGQEIALTCARRGARLVISGRDPERLQQTHAQLAGNGHVQVQADLTVSEDRERLVQA
SQRIDGVVHCFGGQMLSPIRQLKEELMTRMYQVHFLAPVMLTQRLLQANAINAQGSILFMLSTSAHIGTRGVGPYSAMKS
GLLGIIRCLALEQAKHRIRVNGISPSAVPTPRLWGEDNGLNEMLNQQRARHPLGLGTPHDVANAAVYLLADASRWVTGTS
LVMDGGAVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=29.5546558704453, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=29.6747967479675, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=30.5220883534137, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=27.2, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=28.6885245901639, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=31.9148936170213, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=24.1379310344828, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.0546448087432, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=29.9559471365639, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4503817, Length=251, Percent_Identity=23.5059760956175, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=26.8774703557312, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=30, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=24.390243902439, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI4503301, Length=225, Percent_Identity=26.2222222222222, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=26.2886597938144, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1787526, Length=256, Percent_Identity=32.421875, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=31.25, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=28.2258064516129, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=28.7449392712551, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=28.3400809716599, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=27.7551020408163, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789208, Length=258, Percent_Identity=31.0077519379845, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=27.3092369477912, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082160, Length=261, Percent_Identity=27.5862068965517, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786701, Length=235, Percent_Identity=27.2340425531915, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=29.6, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=30.188679245283, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=27.6923076923077, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=28.735632183908, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=29.7619047619048, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=30.8270676691729, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=29.4354838709677, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=27.2030651340996, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=245, Percent_Identity=28.1632653061224, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=28.0898876404494, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=272, Percent_Identity=27.9411764705882, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=27.3469387755102, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=244, Percent_Identity=29.5081967213115, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=26.1904761904762, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=28.3582089552239, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=28.8973384030418, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=273, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=26.4150943396226, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=24.4979919678715, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=23.6947791164659, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=25.6505576208178, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=25, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=26.7441860465116, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=23.574144486692, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=24.4360902255639, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17561272, Length=250, Percent_Identity=27.2, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=27.3809523809524, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=31.4516129032258, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=29.8387096774194, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=32.7800829875519, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=29.4354838709677, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI23397609, Length=245, Percent_Identity=29.7959183673469, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=27.5303643724696, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=25.9109311740891, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18859837, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26993; Mature: 26861

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00962 RIBOSOMAL_S2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNATRKAFFLEGKTILVTGASSGLGQEIALTCARRGARLVISGRDPERLQQTHAQLAGN
CCCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCC
GHVQVQADLTVSEDRERLVQASQRIDGVVHCFGGQMLSPIRQLKEELMTRMYQVHFLAPV
CEEEEEECCEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MLTQRLLQANAINAQGSILFMLSTSAHIGTRGVGPYSAMKSGLLGIIRCLALEQAKHRIR
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEE
VNGISPSAVPTPRLWGEDNGLNEMLNQQRARHPLGLGTPHDVANAAVYLLADASRWVTGT
ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHEEEEEECCCHHCCCC
SLVMDGGAVL
EEEECCCCCC
>Mature Secondary Structure 
SNATRKAFFLEGKTILVTGASSGLGQEIALTCARRGARLVISGRDPERLQQTHAQLAGN
CCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCC
GHVQVQADLTVSEDRERLVQASQRIDGVVHCFGGQMLSPIRQLKEELMTRMYQVHFLAPV
CEEEEEECCEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MLTQRLLQANAINAQGSILFMLSTSAHIGTRGVGPYSAMKSGLLGIIRCLALEQAKHRIR
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEE
VNGISPSAVPTPRLWGEDNGLNEMLNQQRARHPLGLGTPHDVANAAVYLLADASRWVTGT
ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHEEEEEECCCHHCCCC
SLVMDGGAVL
EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]