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The map label for this gene is rpoE [H]

Identifier: 84623882

GI number: 84623882

Start: 2464218

End: 2464718

Strand: Direct

Name: rpoE [H]

Synonym: XOO_2225

Alternate gene names: 84623882

Gene position: 2464218-2464718 (Clockwise)

Preceding gene: 84623878

Following gene: 84623883

Centisome position: 49.88

GC content: 63.47

Gene sequence:

>501_bases
ATGAACGATCTTGATCCTGTGGTAACCGTCAGCGACGGCATCTGCGCACTGCTCCCGCGACTTAGGCGCTTCGCACGCGC
GATTGCCGGCCATCCGGCCGATGCCGACGATCTGCTGCAGGTGGCGATCGAACGGGCGTTGCGTCATTGCGCGCAGTGGC
GGCCGGAAACGCCGCTGCAATACTGGCTGTTTGGCATCATCCGTCATGCATGGCTCGATGAAGTGCGCGCGCAGCGGCGC
AGACGCCAGCTGTTCGTCAGCGCCGCAGAAGGAGAACAGGTCGGCGACAGCCCGATGGAGCGCCAGCAGGAGTGGATGGC
GGTACAGGCGGCAATGGCGCAGTTGCCCGACGAGCAACGGTGGCCGATCGCCTTGGTATTGATCGAAGGGTTGTCGTATC
GGGACGCTGCAGCGGTCCTGGAAATCCCGATCGGCACCCTGACCAGTCGCCTGGCACGCGGCCGCGAAGCGCTACAGGCG
TTATTAGAGGAAAAATCGTGA

Upstream 100 bases:

>100_bases
GCTTGTTGCACGCCATGCCACACTAATCACGCCTCGCAGACGCACCGTGAACGCTTTGCAGCGCGCGCGGAAGAAAACCA
CCTTGCCAGACGTATAGCTG

Downstream 100 bases:

>100_bases
AGGACATCGACGAATCCACGCTGCTGGCCTACGCAGACGGCGCGTTGACACCCGACCAGGCCGGACGCGTCGAGGCCGTG
CTCGCGGCAGATCCGCAGCG

Product: ECF sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MNDLDPVVTVSDGICALLPRLRRFARAIAGHPADADDLLQVAIERALRHCAQWRPETPLQYWLFGIIRHAWLDEVRAQRR
RRQLFVSAAEGEQVGDSPMERQQEWMAVQAAMAQLPDEQRWPIALVLIEGLSYRDAAAVLEIPIGTLTSRLARGREALQA
LLEEKS

Sequences:

>Translated_166_residues
MNDLDPVVTVSDGICALLPRLRRFARAIAGHPADADDLLQVAIERALRHCAQWRPETPLQYWLFGIIRHAWLDEVRAQRR
RRQLFVSAAEGEQVGDSPMERQQEWMAVQAAMAQLPDEQRWPIALVLIEGLSYRDAAAVLEIPIGTLTSRLARGREALQA
LLEEKS
>Mature_166_residues
MNDLDPVVTVSDGICALLPRLRRFARAIAGHPADADDLLQVAIERALRHCAQWRPETPLQYWLFGIIRHAWLDEVRAQRR
RRQLFVSAAEGEQVGDSPMERQQEWMAVQAAMAQLPDEQRWPIALVLIEGLSYRDAAAVLEIPIGTLTSRLARGREALQA
LLEEKS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18786; Mature: 18786

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLDPVVTVSDGICALLPRLRRFARAIAGHPADADDLLQVAIERALRHCAQWRPETPLQ
CCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
YWLFGIIRHAWLDEVRAQRRRRQLFVSAAEGEQVGDSPMERQQEWMAVQAAMAQLPDEQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
WPIALVLIEGLSYRDAAAVLEIPIGTLTSRLARGREALQALLEEKS
CCCHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNDLDPVVTVSDGICALLPRLRRFARAIAGHPADADDLLQVAIERALRHCAQWRPETPLQ
CCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
YWLFGIIRHAWLDEVRAQRRRRQLFVSAAEGEQVGDSPMERQQEWMAVQAAMAQLPDEQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
WPIALVLIEGLSYRDAAAVLEIPIGTLTSRLARGREALQALLEEKS
CCCHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]