| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is cmk [H]
Identifier: 84623706
GI number: 84623706
Start: 2267583
End: 2268266
Strand: Direct
Name: cmk [H]
Synonym: XOO_2049
Alternate gene names: 84623706
Gene position: 2267583-2268266 (Clockwise)
Preceding gene: 84623699
Following gene: 84623707
Centisome position: 45.9
GC content: 65.5
Gene sequence:
>684_bases ATGACCGACCTGTCGCCCGTCCTCACCATCGATGGCCCCTCCGGTGCCGGCAAGGGCACCGTGAGCCGGATCGTGGCCGC CCGGCTTGGCTGGCACTACCTCGATTCGGGCGCACTGTATCGCGCTGTCGGTGTTGCGGCGAGCTGGGCCGACCTGGATG TCTCCGACCCGGCAGCACTGGTGCGCTGCACCTTCGACACCAAGGTGGAATTCGACGATGCGGGGGAGGCAGGGCTGCGA GTGCTGGTCAATGGCGCAGATGTGACCAGTGAGCTGCGCTTGGAAACTACCGGCGCGCTGGCCTCAGCGATTGCCGCCAT TCCCGAGGTGCGCAGCGCCCTGAAAGAGCGCCAACGCGCATTCAGGCGGGCGCCCGGGCTGGTTGCCGACGGGCGCGACA TGGGGACGGTGATCTTCCCGGATGCCGCCTTCAAGGTCTTTCTGACCGCCAGTGCCGAAGAACGTGCGGGCCGTCGCCAT AAACAGTTGATGGAAAAGGGTGTTTCGGTTACCTTTGCCGACCTGCTGCGCGAGATCATGGCCCGTGATGCCCGTGATGC GCAACGGGTGGTGGCGCCATTACGGTCGGCCAAAGACGCCGTGCTGATCGATACCAGCGGAATCGGGGTCGAGGATGTCG TCCAGCGTGTGGTCGGGTTGCTCGCAGACCGCACGCCGTCGTAA
Upstream 100 bases:
>100_bases CGGCAATTCTAACCGGCTTTTTGTCGTGCTTTCAAGTGGTTGCAGCGCGATCGCGTTGAGCGGCGCTACACTACCGCCTG ATGATACCCCGGAAACCTGA
Downstream 100 bases:
>100_bases GTGTTCCGCAAGCGGGCTTGTCCCGCCGACCGTAAGGCGTTCCAAAGCTCCGTCGCGCATCCTGCGCGACGGTTCTACTA CTCCTAAACCGACTCGCTGT
Product: cytidylate kinase
Products: NA
Alternate protein names: CK; Cytidine monophosphate kinase; CMP kinase [H]
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MTDLSPVLTIDGPSGAGKGTVSRIVAARLGWHYLDSGALYRAVGVAASWADLDVSDPAALVRCTFDTKVEFDDAGEAGLR VLVNGADVTSELRLETTGALASAIAAIPEVRSALKERQRAFRRAPGLVADGRDMGTVIFPDAAFKVFLTASAEERAGRRH KQLMEKGVSVTFADLLREIMARDARDAQRVVAPLRSAKDAVLIDTSGIGVEDVVQRVVGLLADRTPS
Sequences:
>Translated_227_residues MTDLSPVLTIDGPSGAGKGTVSRIVAARLGWHYLDSGALYRAVGVAASWADLDVSDPAALVRCTFDTKVEFDDAGEAGLR VLVNGADVTSELRLETTGALASAIAAIPEVRSALKERQRAFRRAPGLVADGRDMGTVIFPDAAFKVFLTASAEERAGRRH KQLMEKGVSVTFADLLREIMARDARDAQRVVAPLRSAKDAVLIDTSGIGVEDVVQRVVGLLADRTPS >Mature_226_residues TDLSPVLTIDGPSGAGKGTVSRIVAARLGWHYLDSGALYRAVGVAASWADLDVSDPAALVRCTFDTKVEFDDAGEAGLRV LVNGADVTSELRLETTGALASAIAAIPEVRSALKERQRAFRRAPGLVADGRDMGTVIFPDAAFKVFLTASAEERAGRRHK QLMEKGVSVTFADLLREIMARDARDAQRVVAPLRSAKDAVLIDTSGIGVEDVVQRVVGLLADRTPS
Specific function: ATP, Datp, And GTP Are Equally Effective As Phosphate Donors. CMP And Dcmp Are The Best Phosphate Acceptors. [C]
COG id: COG0283
COG function: function code F; Cytidylate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytidylate kinase family. Type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787139, Length=218, Percent_Identity=51.3761467889908, Blast_Score=214, Evalue=3e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003136 - InterPro: IPR011994 [H]
Pfam domain/function: PF02224 Cytidylate_kin [H]
EC number: =2.7.4.14 [H]
Molecular weight: Translated: 24087; Mature: 23955
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLSPVLTIDGPSGAGKGTVSRIVAARLGWHYLDSGALYRAVGVAASWADLDVSDPAAL CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEE VRCTFDTKVEFDDAGEAGLRVLVNGADVTSELRLETTGALASAIAAIPEVRSALKERQRA EEEECCCEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FRRAPGLVADGRDMGTVIFPDAAFKVFLTASAEERAGRRHKQLMEKGVSVTFADLLREIM HHHCCCCEECCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEHHHHHHHHH ARDARDAQRVVAPLRSAKDAVLIDTSGIGVEDVVQRVVGLLADRTPS HCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TDLSPVLTIDGPSGAGKGTVSRIVAARLGWHYLDSGALYRAVGVAASWADLDVSDPAAL CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEE VRCTFDTKVEFDDAGEAGLRVLVNGADVTSELRLETTGALASAIAAIPEVRSALKERQRA EEEECCCEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FRRAPGLVADGRDMGTVIFPDAAFKVFLTASAEERAGRRHKQLMEKGVSVTFADLLREIM HHHCCCCEECCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEHHHHHHHHH ARDARDAQRVVAPLRSAKDAVLIDTSGIGVEDVVQRVVGLLADRTPS HCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]