Click here to switch to the map view.

The map label for this gene is ligT [C]

Identifier: 84623456

GI number: 84623456

Start: 1986076

End: 1986678

Strand: Direct

Name: ligT [C]

Synonym: XOO_1799

Alternate gene names: 84623456

Gene position: 1986076-1986678 (Clockwise)

Preceding gene: 84623455

Following gene: 84623457

Centisome position: 40.2

GC content: 63.52

Gene sequence:

>603_bases
ATGAAGCAACAGTTCCTGTACCTATCGTCGGCCCAAGCGCAGTTGTCGCTTGGGCTTGGGGATGAGAAGACCACTGAACG
CCTGTTTTTTGCGGTGATGGCCGATGCGCCCACGGCCGAGCAGGCGGCGCGGATTGCCGACAGCCTGCTGCAAGGCGGGC
ACGCGGAAGGCAAGCCACTTGCGCGCGAACGGCTGCATGTGACCTTGCATCATTTGGGCGATTACGCCGGTGGTTTGCCG
CCATCGTTGGTAAGCCGCGCCACTCAGGCCGCGGCGCGCGTCGCAATGGATGCGTTCGCAGTGGAATTCGACCGCGTCGG
CACCTTCGGTGGCAGGCGCTCGCAACTTCCCTGCGTGTTGCGTGGCGAAGAGCAGGTACGTGGGCTCTACGCGCTGCAAG
GCGCATTGGGAACGCAGCTTGCGCATGTCGGTATTGCCGGCGATGCGCAGTACACGCCACACATGACGCTGCTGTACTGC
AATCAGGCGGTGCCGCAACGACGCTGCGATGCGCTTGCCTGGACGGTGCGCGACTTTGCGCTGGTGCGCAGCTTTCTTGG
CCAGTCGCGTTATCAGATCGAAGGCCGCTGGTCGCTGCGCTGA

Upstream 100 bases:

>100_bases
TCGACGGCGCCCGCGCCGGCGTATTCGGCACATGGCGGGTCTGCTAGTATCCGCCGCTATTCTCAAGCAGGCCCGCGTTG
CGTGGTCGTGGCATCCACCC

Downstream 100 bases:

>100_bases
TGTGCACAGCCGCGCGCACGCGGTAGCCTGCGCGCATGGACATCCCCACGCCCTTGCCGTTGCACGCCGATCACCTGGCC
GCACTCGAACAGGCCTATGC

Product: hypothetical protein

Products: NA

Alternate protein names: 2 5' RNA Ligase; Phosphoesterase HXTX; Ligase; Ligase Protein; 2h Phosphoesterase

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MKQQFLYLSSAQAQLSLGLGDEKTTERLFFAVMADAPTAEQAARIADSLLQGGHAEGKPLARERLHVTLHHLGDYAGGLP
PSLVSRATQAAARVAMDAFAVEFDRVGTFGGRRSQLPCVLRGEEQVRGLYALQGALGTQLAHVGIAGDAQYTPHMTLLYC
NQAVPQRRCDALAWTVRDFALVRSFLGQSRYQIEGRWSLR

Sequences:

>Translated_200_residues
MKQQFLYLSSAQAQLSLGLGDEKTTERLFFAVMADAPTAEQAARIADSLLQGGHAEGKPLARERLHVTLHHLGDYAGGLP
PSLVSRATQAAARVAMDAFAVEFDRVGTFGGRRSQLPCVLRGEEQVRGLYALQGALGTQLAHVGIAGDAQYTPHMTLLYC
NQAVPQRRCDALAWTVRDFALVRSFLGQSRYQIEGRWSLR
>Mature_200_residues
MKQQFLYLSSAQAQLSLGLGDEKTTERLFFAVMADAPTAEQAARIADSLLQGGHAEGKPLARERLHVTLHHLGDYAGGLP
PSLVSRATQAAARVAMDAFAVEFDRVGTFGGRRSQLPCVLRGEEQVRGLYALQGALGTQLAHVGIAGDAQYTPHMTLLYC
NQAVPQRRCDALAWTVRDFALVRSFLGQSRYQIEGRWSLR

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.5.1.- [C]

Molecular weight: Translated: 21869; Mature: 21869

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQQFLYLSSAQAQLSLGLGDEKTTERLFFAVMADAPTAEQAARIADSLLQGGHAEGKPL
CCCCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCH
ARERLHVTLHHLGDYAGGLPPSLVSRATQAAARVAMDAFAVEFDRVGTFGGRRSQLPCVL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
RGEEQVRGLYALQGALGTQLAHVGIAGDAQYTPHMTLLYCNQAVPQRRCDALAWTVRDFA
ECHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
LVRSFLGQSRYQIEGRWSLR
HHHHHHCCCEEEEEEEECCC
>Mature Secondary Structure
MKQQFLYLSSAQAQLSLGLGDEKTTERLFFAVMADAPTAEQAARIADSLLQGGHAEGKPL
CCCCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCH
ARERLHVTLHHLGDYAGGLPPSLVSRATQAAARVAMDAFAVEFDRVGTFGGRRSQLPCVL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
RGEEQVRGLYALQGALGTQLAHVGIAGDAQYTPHMTLLYCNQAVPQRRCDALAWTVRDFA
ECHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
LVRSFLGQSRYQIEGRWSLR
HHHHHHCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA