| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84623149
Identifier: 84623149
GI number: 84623149
Start: 1635598
End: 1637199
Strand: Direct
Name: 84623149
Synonym: XOO_1492
Alternate gene names: NA
Gene position: 1635598-1637199 (Clockwise)
Preceding gene: 84623147
Following gene: 84623152
Centisome position: 33.11
GC content: 66.54
Gene sequence:
>1602_bases ATGTCGGCTCCTTCTTCGCGTCCTGCGGCCTCGCCGCGCTGGTTCGTCGCTGGCGATCTCAATGGCTTCTTTGGCCTGGT GGTCGACAATCTGTCTATCCTCGGCTTTATCGCGATGGCCTTGGTCGGCATCTTCCAGTTCCCGGCCGAGGTGGTCTTCG GGCGCATGTTCCCGGGCACCGCATTCGGCGTGCTGGTGGGCAACCTGCTGTACACCCTGATGGCGCGGCGACTTGCTGCA CGCACCGGGCGCGACGATGTCACCGCCATGCCGCTGGGCCTGGATGCGCCCACCAGCATCGGCATGGCGCTGCTGGTGCT CGGCCCGGCATTTGCCGGTTTCAAAGCGCAGGGGCTGGACCCGCAAGCCGCCGCGATCGCCACCTGGAAACTCGGCATGG CCGCACTGGTGGTGATTGGCCTGCTCAAGCTGGTGCTGTCGTTCGTGGGCGAAGCGGTGACGCGTGCACTACCGCGTGCG GCCTTGCTCGGTTCCATCGCCGGCATCGCGCTGGTGTTGATGGGCTTGTTGCCGCTGCTGGAAACGCTACGCTCGCCGGT CGCCGGTTTCGTCACCCTGGGTCTGCTGCTGTATGTGCTGCTGGCCAAGGGCCGCCTGCCGACGAAATTGCCCGGCGTGC TGGTGGCGTTTTTGATCGGCACCGCGCTGTACTACGGGCTCGCCTTGGCGGGACTGGGCGCGCCCGGTTTCGCCGTGCCG GCGTGGAACCCGCCGCAGATCGTGCTGCCGTTGCCGAACCTCGGCTTCATCGACGGCCTGCCGGCCACGGTGGCGTACTT GCCGTTGCTGCTGCCGTTCGGCGTATTGATGGTGGTGGGCGGCATCAACGTCAGCGAAAGCGCGCGCGCGGCCGGCGACG ATTACCGCACCCGCGACATCCTGCTGGTGGAAGCCTTGGCCACGCTGGTGGCCGGCGTCTGCGGCGGCGTGGCGCAGACC ACGCCCTACATCGGCCAGCCCGCGTACAAGCACATGGGCGCGCGCTCCGGTTACACGCTGCTGACGGGGGTGTTTATCGG TATCGGCGGCATGCTTGGGGTGATCAGCGGGCTGGTGCAATGGCTACCGCTGGCAGTGCTGGCGCCCATCATCGTGTACG TCTCGATCGACATCACCACGCAGGCATTCCAGGCCACGCCGAAACAGCACGCCGGCGCGATGGTGCTGGGCTTTCTGCCG TCGGTGGCGTACCTGTTGACCATCAAGGCACCGGGCTGGATCGCGCCGGATCAGCTGGTGGCGCTGACCACCAAGGTCGA CGGCCACGGGCTGCCGGAGCTGGCAGTGATCTTCGCGCTGGGCAACGGCTTCATCATCACCGCGATGCTGTGGATTGCCA CGGTGGCAGCGATGATCGATGGCCGGCTGCGGCGCGGTGCGGTGTGCCTGCTGGTGGCTGCGGGGCTGACCTTGTTCGGT TTGATCCATTCGGTGGACCCGCGTGGCGGCATCTATCTGCCGTGGTCGCTGCAAGGTCTGGCGCGCGTGATCAGCTGGCA GTTCGTCGGTGCCTATGTTGCGCTGGCGGCGACCTTGCTGCTGTTGTCGCTACTGTCGGCACGTAAGGAGGCACTGCAGT GA
Upstream 100 bases:
>100_bases CCGGCGTCTAGGAGTTGCTTCGCTATGTTACCGGTCGCGCCGCTGTCGCCACTGCAGTGCAGCAGCTACCATCGGCCGAC CCTCACGCTTCCTGGTTCTC
Downstream 100 bases:
>100_bases CCTATCGTTCGCGTGTTGCGCAGTGCATTGTGGGTAGCGCGTTGTTGCTCAGCGCCAGCGCGGCATGGTCGGCGTCGTTC GACTGCTTGGCTTCGTGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: Permease; MFS Transporter Xanthine/Uracil Permease; Permease Subfamily Putative; Sulphate Transporter; Regulator; Transcriptional Regulator; Permease Subfamily
Number of amino acids: Translated: 533; Mature: 532
Protein sequence:
>533_residues MSAPSSRPAASPRWFVAGDLNGFFGLVVDNLSILGFIAMALVGIFQFPAEVVFGRMFPGTAFGVLVGNLLYTLMARRLAA RTGRDDVTAMPLGLDAPTSIGMALLVLGPAFAGFKAQGLDPQAAAIATWKLGMAALVVIGLLKLVLSFVGEAVTRALPRA ALLGSIAGIALVLMGLLPLLETLRSPVAGFVTLGLLLYVLLAKGRLPTKLPGVLVAFLIGTALYYGLALAGLGAPGFAVP AWNPPQIVLPLPNLGFIDGLPATVAYLPLLLPFGVLMVVGGINVSESARAAGDDYRTRDILLVEALATLVAGVCGGVAQT TPYIGQPAYKHMGARSGYTLLTGVFIGIGGMLGVISGLVQWLPLAVLAPIIVYVSIDITTQAFQATPKQHAGAMVLGFLP SVAYLLTIKAPGWIAPDQLVALTTKVDGHGLPELAVIFALGNGFIITAMLWIATVAAMIDGRLRRGAVCLLVAAGLTLFG LIHSVDPRGGIYLPWSLQGLARVISWQFVGAYVALAATLLLLSLLSARKEALQ
Sequences:
>Translated_533_residues MSAPSSRPAASPRWFVAGDLNGFFGLVVDNLSILGFIAMALVGIFQFPAEVVFGRMFPGTAFGVLVGNLLYTLMARRLAA RTGRDDVTAMPLGLDAPTSIGMALLVLGPAFAGFKAQGLDPQAAAIATWKLGMAALVVIGLLKLVLSFVGEAVTRALPRA ALLGSIAGIALVLMGLLPLLETLRSPVAGFVTLGLLLYVLLAKGRLPTKLPGVLVAFLIGTALYYGLALAGLGAPGFAVP AWNPPQIVLPLPNLGFIDGLPATVAYLPLLLPFGVLMVVGGINVSESARAAGDDYRTRDILLVEALATLVAGVCGGVAQT TPYIGQPAYKHMGARSGYTLLTGVFIGIGGMLGVISGLVQWLPLAVLAPIIVYVSIDITTQAFQATPKQHAGAMVLGFLP SVAYLLTIKAPGWIAPDQLVALTTKVDGHGLPELAVIFALGNGFIITAMLWIATVAAMIDGRLRRGAVCLLVAAGLTLFG LIHSVDPRGGIYLPWSLQGLARVISWQFVGAYVALAATLLLLSLLSARKEALQ >Mature_532_residues SAPSSRPAASPRWFVAGDLNGFFGLVVDNLSILGFIAMALVGIFQFPAEVVFGRMFPGTAFGVLVGNLLYTLMARRLAAR TGRDDVTAMPLGLDAPTSIGMALLVLGPAFAGFKAQGLDPQAAAIATWKLGMAALVVIGLLKLVLSFVGEAVTRALPRAA LLGSIAGIALVLMGLLPLLETLRSPVAGFVTLGLLLYVLLAKGRLPTKLPGVLVAFLIGTALYYGLALAGLGAPGFAVPA WNPPQIVLPLPNLGFIDGLPATVAYLPLLLPFGVLMVVGGINVSESARAAGDDYRTRDILLVEALATLVAGVCGGVAQTT PYIGQPAYKHMGARSGYTLLTGVFIGIGGMLGVISGLVQWLPLAVLAPIIVYVSIDITTQAFQATPKQHAGAMVLGFLPS VAYLLTIKAPGWIAPDQLVALTTKVDGHGLPELAVIFALGNGFIITAMLWIATVAAMIDGRLRRGAVCLLVAAGLTLFGL IHSVDPRGGIYLPWSLQGLARVISWQFVGAYVALAATLLLLSLLSARKEALQ
Specific function: Unknown
COG id: COG2252
COG function: function code R; Permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55326; Mature: 55195
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPSSRPAASPRWFVAGDLNGFFGLVVDNLSILGFIAMALVGIFQFPAEVVFGRMFPGT CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH AFGVLVGNLLYTLMARRLAARTGRDDVTAMPLGLDAPTSIGMALLVLGPAFAGFKAQGLD HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC PQAAAIATWKLGMAALVVIGLLKLVLSFVGEAVTRALPRAALLGSIAGIALVLMGLLPLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ETLRSPVAGFVTLGLLLYVLLAKGRLPTKLPGVLVAFLIGTALYYGLALAGLGAPGFAVP HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AWNPPQIVLPLPNLGFIDGLPATVAYLPLLLPFGVLMVVGGINVSESARAAGDDYRTRDI CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHH LLVEALATLVAGVCGGVAQTTPYIGQPAYKHMGARSGYTLLTGVFIGIGGMLGVISGLVQ HHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH WLPLAVLAPIIVYVSIDITTQAFQATPKQHAGAMVLGFLPSVAYLLTIKAPGWIAPDQLV HHHHHHHHHHHHHHEECCCHHHHHCCCHHHCCHHHHHHHHHHHHHEEECCCCCCCCCHHE ALTTKVDGHGLPELAVIFALGNGFIITAMLWIATVAAMIDGRLRRGAVCLLVAAGLTLFG EEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH LIHSVDPRGGIYLPWSLQGLARVISWQFVGAYVALAATLLLLSLLSARKEALQ HHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SAPSSRPAASPRWFVAGDLNGFFGLVVDNLSILGFIAMALVGIFQFPAEVVFGRMFPGT CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH AFGVLVGNLLYTLMARRLAARTGRDDVTAMPLGLDAPTSIGMALLVLGPAFAGFKAQGLD HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC PQAAAIATWKLGMAALVVIGLLKLVLSFVGEAVTRALPRAALLGSIAGIALVLMGLLPLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ETLRSPVAGFVTLGLLLYVLLAKGRLPTKLPGVLVAFLIGTALYYGLALAGLGAPGFAVP HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AWNPPQIVLPLPNLGFIDGLPATVAYLPLLLPFGVLMVVGGINVSESARAAGDDYRTRDI CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHH LLVEALATLVAGVCGGVAQTTPYIGQPAYKHMGARSGYTLLTGVFIGIGGMLGVISGLVQ HHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH WLPLAVLAPIIVYVSIDITTQAFQATPKQHAGAMVLGFLPSVAYLLTIKAPGWIAPDQLV HHHHHHHHHHHHHHEECCCHHHHHCCCHHHCCHHHHHHHHHHHHHEEECCCCCCCCCHHE ALTTKVDGHGLPELAVIFALGNGFIITAMLWIATVAAMIDGRLRRGAVCLLVAAGLTLFG EEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH LIHSVDPRGGIYLPWSLQGLARVISWQFVGAYVALAATLLLLSLLSARKEALQ HHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA