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The map label for this gene is cspA [H]

Identifier: 84623058

GI number: 84623058

Start: 1526772

End: 1526987

Strand: Direct

Name: cspA [H]

Synonym: XOO_1401

Alternate gene names: 84623058

Gene position: 1526772-1526987 (Clockwise)

Preceding gene: 84623056

Following gene: 84623061

Centisome position: 30.9

GC content: 56.02

Gene sequence:

>216_bases
ATGTCCAACATCGAACGCGAGAATGGTCTCGTGAAGTGGTTCAACGATGCCAAGGGCTTTGGATTCATTAGCCGCGAAAA
TGGCGAAGACGTCTTCGTCCATTTCCGCGCGATCCAGATCCAGGGCTTCAAGAGCCTCAAGGAAGGTCAGAAGGTCAGCT
TTACGGTCGTGCAGGGCCAGAAGGGCCTGCAGGCCGACGCAGTGCAGGTGGTCTGA

Upstream 100 bases:

>100_bases
GGTAGATCGTCCGATCTGCTACATCCTTGTACCTCGCTTCCTCCTTGCAATCACAGCCACCACCGCCAGTCCATCACAGT
GTCGTAGGGAGTCAGTCGAG

Downstream 100 bases:

>100_bases
GTCCACGCCTGTGTAAGCGCATCACGCAGACAGCAGAAAGGCCCGCGATCGGGCCTTTCTGTTTTTTTGCTGTTTATCTT
GCCGACGCACTCAGCGGGTA

Product: major cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MSNIERENGLVKWFNDAKGFGFISRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQKGLQADAVQVV

Sequences:

>Translated_71_residues
MSNIERENGLVKWFNDAKGFGFISRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQKGLQADAVQVV
>Mature_70_residues
SNIERENGLVKWFNDAKGFGFISRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQKGLQADAVQVV

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=60.9375, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=57.9710144927536, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=54.5454545454545, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI2367114, Length=69, Percent_Identity=56.5217391304348, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=57.8125, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1787839, Length=72, Percent_Identity=54.1666666666667, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1787834, Length=72, Percent_Identity=55.5555555555556, Blast_Score=69, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7959; Mature: 7828

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIERENGLVKWFNDAKGFGFISRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQ
CCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEECC
KGLQADAVQVV
CCCCCCEEEEC
>Mature Secondary Structure 
SNIERENGLVKWFNDAKGFGFISRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQ
CCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEECC
KGLQADAVQVV
CCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]