| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84622993
Identifier: 84622993
GI number: 84622993
Start: 1456735
End: 1459557
Strand: Direct
Name: 84622993
Synonym: XOO_1336
Alternate gene names: NA
Gene position: 1456735-1459557 (Clockwise)
Preceding gene: 84622992
Following gene: 84622994
Centisome position: 29.49
GC content: 72.58
Gene sequence:
>2823_bases ATGGAAGCACTGAATGCGTTGATGTTTCAGGGGGCCTTGCTGTCCGACAGCGGCCGCCTATACCGCTTGCAGCTGCCTGG CGGGGATGTCCAGGTGGTGGAGCGCTGGAGCGGGTCGGAACGGCTGAGCGGCGGTTTTGAGTGGTGGGTGGACGTGCTGA GCACGCAGGCGGGCTTGCCGCTGGAGGCGTGGCTGGGGCGGCGCGCGACGCTGTACACCCGGCTGGCCGATGGCGATGAA AGCCCGCGCACGGGGCTGATCCACGACGCGTACGCACTGGGCAGCGACGGCGGGCTGGCGCGCTACCGGGTAGGCCTGGT GCCGTGGACGTGGTGGTTGTCGCAGGGCCGGCACAGCCGGGTATTCCAGGAACGCACGCTGGTGCAGATCGTGGAAGCGG TGTTCGCCGACTACGCGCCGATGGCAAGCTGGCAGTGGAGCGAGGAGACGAGCGCGTTCCTGGCCCAGGCGCGGCCGCGC AGCTACTGCGTGCAGTACCGCGAGAGCGACCTGGATTTCGTGCAGCGGCTGCTGGCCGAGGAAGGCCTGGGCTGGCGGCT GCAGGAGGCGGACGCGTCGCCCGGCGGGCACCAGCTGGTGGTGTTCGCCGACAGCGTCGCGCAACCGCAGGACCCCAGTT CGGCGCAGGGCGGCGGGCTGCGCTACCACCGCAGCGACGCCACCGAGGCGGCCGACAGCGTGCTGGCGATCGGCGCCACC CGGCGGCTGGGCAGCGGCCGGCTGACGGTGCTCAGCGAAGACTTCAAGACGCGTCAGGCGCGCAGCGCGCAGTTGCCGTT GCACGGCGGCGGCAGGCAGTCGCTGCGCGAGGTGTACGAGCCGGTGGGGATGGACGCCTTCGCCAGCGCGCAGGCAGCAG ACCGCTCTGCGGAGTTGATGGCGCAGGCGCACGAGGCGCAGTGGTCACCGTGGCAGGGCCGCAGCACGGTGCGCACGCTG CGCGCCGGCACCTGGTTCACGCTGACCCAGTCACCGCAGCAGGGCCAGGCACCGCCGGCGCAGCTGTTGCTGACGCGGGT GTGGCATGCGGGTATCAACAACTTGCCGGTGGACGTGCGCGCGGCGGTGCAGTCGCAGTTGGGGGCCGCGCCGGCGTGGC CGGATGCCAGCGCGGTGGCCGCACGCAGCACCTGGGCGCAGGCCGAGGCGGTGGGCTACGGCAACGCCTTCGAGGCGGTG GACCGGCAGCAGCCGTGGCGGCCGGTGCTGGCCGACGGCACCGGGGCGCGGCTGCACCCGCGGCCGACCGCGCCGGGCTA CCAGAGCGCCATCGTGGTCGGTGCCGATGGCAGCACCGACGGCAGCCAGGAGGTCCATGCCGACGCGCTGGGCCGGATCC GGGTCAGGTTCCACTTCCAGCACGCCGCGTCGGCCCCGGCCGCGCAGGACAGCACGTGGCTGCGGGTGGCGCAGCGCTAC GCCGGCCCGGGCGTGGGCAGCCAGTTCCTGCCACGCATCGGCCAGGAAGTGCTGGTGGGCTTCCTGGAGGGGGACATCGA CCGTCCGGTGGTGCTGGGTGCGCTGTACAACGGCAAGGGCGAAGCCGGCGTTCCCGCCACCCCCGGCGGCACCAGCGCCG AGGCCGACACCGGCCTGTACGCCAAGGCCGGCGACGGTAGACCCAGCGCGCAGGGCAACCTGGCCGGCGGCCATGCCCCG GCCTGGCACGGCGCCGGCGGCGGCGCGGACAACCACCGCAACGCCACCGCGCTGTGGGGCGTGCAATCCAAGGAATGGGG CAGCGCTGGCCACAGCCGGCTGGTGTTCGACGACAGCGACCAGCAACTGCGCTTGCAGCTGGCCACGACCCAGGCAGCCA CGCAACTGAACCTGGGGCACCTGATCCACCAGGCCGACAACTACCGCGGCAGCTTCCGCGGGGAAGGCTTCGAACTGCGC ACCGACGCGTGGGGCGCGGTGCGTGCCAGCTCGGGGCTATGGCTGAGCAGCTACGGCCGCAGCGGCGGCCCGGCCGGCGA GGCGACCCAGCCCAGCGCATTGCTGAGCCAGCTGCAGACGCTGGGCAAGACGTTCTCGCAGGCGGCGGGCACGCACCAGA CGGTGAAGCTGGCCGCGCACGAAGGCGTGGGCCAGGCGAACCACTCCCAGCTGATCGCCGAGCAGGCGCCGCTGCCGGCG CTGCTGACCAGCGTGAAGACCACGGTGCCGGGCACGGCCTACGCCGACGCCAAGGGCGCGGCGGCCGAGCGCCGCGCCAG CCCGGGCGACGACCGGGTGCCGCACACCGGCGATGCGCTGCTGGGCCTGGCGGCGCCAGCGGGGATCGGCGTGGTGGCCG GCCAGGGCCTGAGCTGGAGCGTGGGCGAGACGCTGACGCTGGCCAGCGGCGCGGGCAGCGAAGCGGCCATCGCCGGCGAC GCCCGGCTGCACAGCGGCCAGGCAATCGGCGTGCTGGCCGCGGCGGTGGACGGCCGGCAAACGCAAGCCAACAGCCTGAG CCTCGTCAGCGGCGAAGGCGCGCTGGACGTGCAGGCGCAGTCGGACGACGTGCGCGTGCAGTCGAAAGAAGGCCTGAAGC TGATCAGCGCCAACGCCGACGTGGCCCTGGCGGCGGGCAAGACCCTCCACCTGGCGGTGGCCGGCGGGGCCAGCGTGACC ATCGAAGGCGGCAACATCACCGTCGCCTGCCCCGGCACCATCACCGTGCATGCGAGCAAGAAGTCGTTCGTGGGGCCAAC GACGCTGAACCGGTCGTTTGTCGCTTGGCCGCAAAGCAACTTGAATGCGCCTTGCATGATGCAGGCTGCGGCGACCAATA GCGCGTTTGTGCGAGTGGACTAA
Upstream 100 bases:
>100_bases CGCCTGCATGCGCGCCGCCGCCTCGTCTGTTAAATTCGCCCTCCAGGGGCAGGAAACGATGTTGCCCGGGGCGCGATGGC CCGAGGACAGAGGTATTGTG
Downstream 100 bases:
>100_bases CGGACCATGAAACGCAGCAGCCTAAGCAATCCTGCCTCCTACCAGCATTGGGTCATGTCGCATGTCGGCGAGGAGCAATA CCTGATCGCCCTGCTCGACC
Product: putative VGR-related protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; VgrG Protein; Rhs-Family Protein; Rhs Element Vgr Family; VGR-Like Protein; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Element Vgr Related Protein; Rhs Element Vgr-Related Protein; Conserved Hypothethical Protein; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; Fimbrial Operon Related Protein; VgrG Family T6SS G; Vgr Family Type VI Secretion System
Number of amino acids: Translated: 940; Mature: 940
Protein sequence:
>940_residues MEALNALMFQGALLSDSGRLYRLQLPGGDVQVVERWSGSERLSGGFEWWVDVLSTQAGLPLEAWLGRRATLYTRLADGDE SPRTGLIHDAYALGSDGGLARYRVGLVPWTWWLSQGRHSRVFQERTLVQIVEAVFADYAPMASWQWSEETSAFLAQARPR SYCVQYRESDLDFVQRLLAEEGLGWRLQEADASPGGHQLVVFADSVAQPQDPSSAQGGGLRYHRSDATEAADSVLAIGAT RRLGSGRLTVLSEDFKTRQARSAQLPLHGGGRQSLREVYEPVGMDAFASAQAADRSAELMAQAHEAQWSPWQGRSTVRTL RAGTWFTLTQSPQQGQAPPAQLLLTRVWHAGINNLPVDVRAAVQSQLGAAPAWPDASAVAARSTWAQAEAVGYGNAFEAV DRQQPWRPVLADGTGARLHPRPTAPGYQSAIVVGADGSTDGSQEVHADALGRIRVRFHFQHAASAPAAQDSTWLRVAQRY AGPGVGSQFLPRIGQEVLVGFLEGDIDRPVVLGALYNGKGEAGVPATPGGTSAEADTGLYAKAGDGRPSAQGNLAGGHAP AWHGAGGGADNHRNATALWGVQSKEWGSAGHSRLVFDDSDQQLRLQLATTQAATQLNLGHLIHQADNYRGSFRGEGFELR TDAWGAVRASSGLWLSSYGRSGGPAGEATQPSALLSQLQTLGKTFSQAAGTHQTVKLAAHEGVGQANHSQLIAEQAPLPA LLTSVKTTVPGTAYADAKGAAAERRASPGDDRVPHTGDALLGLAAPAGIGVVAGQGLSWSVGETLTLASGAGSEAAIAGD ARLHSGQAIGVLAAAVDGRQTQANSLSLVSGEGALDVQAQSDDVRVQSKEGLKLISANADVALAAGKTLHLAVAGGASVT IEGGNITVACPGTITVHASKKSFVGPTTLNRSFVAWPQSNLNAPCMMQAAATNSAFVRVD
Sequences:
>Translated_940_residues MEALNALMFQGALLSDSGRLYRLQLPGGDVQVVERWSGSERLSGGFEWWVDVLSTQAGLPLEAWLGRRATLYTRLADGDE SPRTGLIHDAYALGSDGGLARYRVGLVPWTWWLSQGRHSRVFQERTLVQIVEAVFADYAPMASWQWSEETSAFLAQARPR SYCVQYRESDLDFVQRLLAEEGLGWRLQEADASPGGHQLVVFADSVAQPQDPSSAQGGGLRYHRSDATEAADSVLAIGAT RRLGSGRLTVLSEDFKTRQARSAQLPLHGGGRQSLREVYEPVGMDAFASAQAADRSAELMAQAHEAQWSPWQGRSTVRTL RAGTWFTLTQSPQQGQAPPAQLLLTRVWHAGINNLPVDVRAAVQSQLGAAPAWPDASAVAARSTWAQAEAVGYGNAFEAV DRQQPWRPVLADGTGARLHPRPTAPGYQSAIVVGADGSTDGSQEVHADALGRIRVRFHFQHAASAPAAQDSTWLRVAQRY AGPGVGSQFLPRIGQEVLVGFLEGDIDRPVVLGALYNGKGEAGVPATPGGTSAEADTGLYAKAGDGRPSAQGNLAGGHAP AWHGAGGGADNHRNATALWGVQSKEWGSAGHSRLVFDDSDQQLRLQLATTQAATQLNLGHLIHQADNYRGSFRGEGFELR TDAWGAVRASSGLWLSSYGRSGGPAGEATQPSALLSQLQTLGKTFSQAAGTHQTVKLAAHEGVGQANHSQLIAEQAPLPA LLTSVKTTVPGTAYADAKGAAAERRASPGDDRVPHTGDALLGLAAPAGIGVVAGQGLSWSVGETLTLASGAGSEAAIAGD ARLHSGQAIGVLAAAVDGRQTQANSLSLVSGEGALDVQAQSDDVRVQSKEGLKLISANADVALAAGKTLHLAVAGGASVT IEGGNITVACPGTITVHASKKSFVGPTTLNRSFVAWPQSNLNAPCMMQAAATNSAFVRVD >Mature_940_residues MEALNALMFQGALLSDSGRLYRLQLPGGDVQVVERWSGSERLSGGFEWWVDVLSTQAGLPLEAWLGRRATLYTRLADGDE SPRTGLIHDAYALGSDGGLARYRVGLVPWTWWLSQGRHSRVFQERTLVQIVEAVFADYAPMASWQWSEETSAFLAQARPR SYCVQYRESDLDFVQRLLAEEGLGWRLQEADASPGGHQLVVFADSVAQPQDPSSAQGGGLRYHRSDATEAADSVLAIGAT RRLGSGRLTVLSEDFKTRQARSAQLPLHGGGRQSLREVYEPVGMDAFASAQAADRSAELMAQAHEAQWSPWQGRSTVRTL RAGTWFTLTQSPQQGQAPPAQLLLTRVWHAGINNLPVDVRAAVQSQLGAAPAWPDASAVAARSTWAQAEAVGYGNAFEAV DRQQPWRPVLADGTGARLHPRPTAPGYQSAIVVGADGSTDGSQEVHADALGRIRVRFHFQHAASAPAAQDSTWLRVAQRY AGPGVGSQFLPRIGQEVLVGFLEGDIDRPVVLGALYNGKGEAGVPATPGGTSAEADTGLYAKAGDGRPSAQGNLAGGHAP AWHGAGGGADNHRNATALWGVQSKEWGSAGHSRLVFDDSDQQLRLQLATTQAATQLNLGHLIHQADNYRGSFRGEGFELR TDAWGAVRASSGLWLSSYGRSGGPAGEATQPSALLSQLQTLGKTFSQAAGTHQTVKLAAHEGVGQANHSQLIAEQAPLPA LLTSVKTTVPGTAYADAKGAAAERRASPGDDRVPHTGDALLGLAAPAGIGVVAGQGLSWSVGETLTLASGAGSEAAIAGD ARLHSGQAIGVLAAAVDGRQTQANSLSLVSGEGALDVQAQSDDVRVQSKEGLKLISANADVALAAGKTLHLAVAGGASVT IEGGNITVACPGTITVHASKKSFVGPTTLNRSFVAWPQSNLNAPCMMQAAATNSAFVRVD
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98631; Mature: 98631
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEALNALMFQGALLSDSGRLYRLQLPGGDVQVVERWSGSERLSGGFEWWVDVLSTQAGLP CCHHHHHHHCCEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCC LEAWLGRRATLYTRLADGDESPRTGLIHDAYALGSDGGLARYRVGLVPWTWWLSQGRHSR HHHHHCCCEEEEEEECCCCCCCCCCEEEHHEEECCCCCEEEEEEECCCHHHHHHCCCHHH VFQERTLVQIVEAVFADYAPMASWQWSEETSAFLAQARPRSYCVQYRESDLDFVQRLLAE HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH EGLGWRLQEADASPGGHQLVVFADSVAQPQDPSSAQGGGLRYHRSDATEAADSVLAIGAT CCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHEEEEECH RRLGSGRLTVLSEDFKTRQARSAQLPLHGGGRQSLREVYEPVGMDAFASAQAADRSAELM HCCCCCEEEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCHHHHHH AQAHEAQWSPWQGRSTVRTLRAGTWFTLTQSPQQGQAPPAQLLLTRVWHAGINNLPVDVR HHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH AAVQSQLGAAPAWPDASAVAARSTWAQAEAVGYGNAFEAVDRQQPWRPVLADGTGARLHP HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEECCCCCEECC RPTAPGYQSAIVVGADGSTDGSQEVHADALGRIRVRFHFQHAASAPAAQDSTWLRVAQRY CCCCCCCCCEEEEECCCCCCCCCHHHHHHHCEEEEEEEEEHHCCCCCCCCHHHHHHHHHH AGPGVGSQFLPRIGQEVLVGFLEGDIDRPVVLGALYNGKGEAGVPATPGGTSAEADTGLY CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEE AKAGDGRPSAQGNLAGGHAPAWHGAGGGADNHRNATALWGVQSKEWGSAGHSRLVFDDSD EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCC QQLRLQLATTQAATQLNLGHLIHQADNYRGSFRGEGFELRTDAWGAVRASSGLWLSSYGR CEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEECCCCCEEECCCC SGGPAGEATQPSALLSQLQTLGKTFSQAAGTHQTVKLAAHEGVGQANHSQLIAEQAPLPA CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCCCHHH LLTSVKTTVPGTAYADAKGAAAERRASPGDDRVPHTGDALLGLAAPAGIGVVAGQGLSWS HHHHHHHCCCCCEECCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCC VGETLTLASGAGSEAAIAGDARLHSGQAIGVLAAAVDGRQTQANSLSLVSGEGALDVQAQ CCCEEEEECCCCCCEEEECCCEECCCCEEEEEEEECCCCCCCCCCEEEEECCCCEEEEEC SDDVRVQSKEGLKLISANADVALAAGKTLHLAVAGGASVTIEGGNITVACPGTITVHASK CCCEEEECCCCEEEEECCCCEEEECCCEEEEEEECCCEEEEECCEEEEECCCEEEEEECC KSFVGPTTLNRSFVAWPQSNLNAPCMMQAAATNSAFVRVD CCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCEEEEEC >Mature Secondary Structure MEALNALMFQGALLSDSGRLYRLQLPGGDVQVVERWSGSERLSGGFEWWVDVLSTQAGLP CCHHHHHHHCCEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCC LEAWLGRRATLYTRLADGDESPRTGLIHDAYALGSDGGLARYRVGLVPWTWWLSQGRHSR HHHHHCCCEEEEEEECCCCCCCCCCEEEHHEEECCCCCEEEEEEECCCHHHHHHCCCHHH VFQERTLVQIVEAVFADYAPMASWQWSEETSAFLAQARPRSYCVQYRESDLDFVQRLLAE HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH EGLGWRLQEADASPGGHQLVVFADSVAQPQDPSSAQGGGLRYHRSDATEAADSVLAIGAT CCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHEEEEECH RRLGSGRLTVLSEDFKTRQARSAQLPLHGGGRQSLREVYEPVGMDAFASAQAADRSAELM HCCCCCEEEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCHHHHHH AQAHEAQWSPWQGRSTVRTLRAGTWFTLTQSPQQGQAPPAQLLLTRVWHAGINNLPVDVR HHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH AAVQSQLGAAPAWPDASAVAARSTWAQAEAVGYGNAFEAVDRQQPWRPVLADGTGARLHP HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEECCCCCEECC RPTAPGYQSAIVVGADGSTDGSQEVHADALGRIRVRFHFQHAASAPAAQDSTWLRVAQRY CCCCCCCCCEEEEECCCCCCCCCHHHHHHHCEEEEEEEEEHHCCCCCCCCHHHHHHHHHH AGPGVGSQFLPRIGQEVLVGFLEGDIDRPVVLGALYNGKGEAGVPATPGGTSAEADTGLY CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEE AKAGDGRPSAQGNLAGGHAPAWHGAGGGADNHRNATALWGVQSKEWGSAGHSRLVFDDSD EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCC QQLRLQLATTQAATQLNLGHLIHQADNYRGSFRGEGFELRTDAWGAVRASSGLWLSSYGR CEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEECCCCCEEECCCC SGGPAGEATQPSALLSQLQTLGKTFSQAAGTHQTVKLAAHEGVGQANHSQLIAEQAPLPA CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCCCHHH LLTSVKTTVPGTAYADAKGAAAERRASPGDDRVPHTGDALLGLAAPAGIGVVAGQGLSWS HHHHHHHCCCCCEECCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCC VGETLTLASGAGSEAAIAGDARLHSGQAIGVLAAAVDGRQTQANSLSLVSGEGALDVQAQ CCCEEEEECCCCCCEEEECCCEECCCCEEEEEEEECCCCCCCCCCEEEEECCCCEEEEEC SDDVRVQSKEGLKLISANADVALAAGKTLHLAVAGGASVTIEGGNITVACPGTITVHASK CCCEEEECCCCEEEEECCCCEEEECCCEEEEEEECCCEEEEECCEEEEECCCEEEEEECC KSFVGPTTLNRSFVAWPQSNLNAPCMMQAAATNSAFVRVD CCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA