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The map label for this gene is cydA [H]

Identifier: 84622828

GI number: 84622828

Start: 1281554

End: 1282954

Strand: Direct

Name: cydA [H]

Synonym: XOO_1171

Alternate gene names: 84622828

Gene position: 1281554-1282954 (Clockwise)

Preceding gene: 84622826

Following gene: 84622829

Centisome position: 25.94

GC content: 62.24

Gene sequence:

>1401_bases
ATGGACGCACTGCTGTTATCCCGGATCCAGTTCGGGTTCGTCATCGCGTTCCACGTGCTGTTTCCGGCATTCACCATCGG
GCTTTCCAGTCTGCTGGCATTTCTGGAATGGCGCTGGCTGCGCACGCGTCTGCCAGTCTGGCGCGAGCTGTATTTTTTCT
GGCAGAAGATCTTCGCGGTGTCATTCGGCATGGGCGTGGTCAGCGGCATCGTGATGGCCTTCCAGTTCGGCGCCAACTGG
CCGGAATTGAGCCGGATTGCCGGTGGCGTGATCGGGCCGTTGCTGAGCTATGAAGTGCTCACTGCGTTTTTTCTCGAAGC
CAGTTTCCTGGGCGTGATGCTGTTCGGCTGGGGGCGCATCTCCGAGCGCCTGCATTTCTTTTCCAGCTGCATGGTGGCGT
TGGGCACGCTGGTCTCCACGTTCTGGATTCTCTCGTCCAATAGCTGGTTGCAGACGCCTGCGGGCTTTGATGTGATCGGC
GGCATCGTGCATCCGGTGGATTGGTTGAAGATCATCTTCAACCCCTCGTTCCCTTACCGGCTAGCGCATATGGCGCTGGG
CTCGTTCATCACCACCTGTTTTGTGGTGGGTGCAGTGGGCGCGTGGTATCTGCACCGCGGTGTGCATCGCGACGCCGGGC
TGCGCATGCTCAAGCTGGCCGTGGTGTTTGCCGCAATCACCGTGCCGCTGCAGATCTTCGTCGGCGACATGCAGGGCTTG
AACACGCTCAAGCATCAGCCGATGAAGATCGCCGCAATGGAAGCGCATTGGCATGCCGAACAGCCGGGCGAGGGATTTCC
GCTGGTGGTGTTTGCGCTGCCCGATGCACAGGCCGAGCGTAATGATGACGAGGTGGCGATTCCGCGCCTGGGCAGCCTGA
TCCTGACCCACCGCCTGGACGGCAGCATCGCGCCGCTGACCTCGGTGCCGGCAAGCGAGCGCCCGCCGGTGACGCCGGTG
TTCTTCGCGTTTCGCATCATGGTGGGGATCGGCTCATTGATGCTGCTGGTTGCCTGGGTGTCTGCGTTCGCGTTGTGGCG
CGGCAAGCTGGTGCAGTGGCGCTGGTTGCTGGCGACCTGGCGCTGGATGTTGCCGAGCGGCTTCATTGCGCTGATTTCCG
GCTGGTTCGTCACCGAGATCGGCCGGCAGCCCTATGTGGTCTACGGCTTGTTGCGCACCGCCGATGCGGTGGGTCCGCAG
TCTGCGCTGATGACCACCATTTCGCTGGTGGTGTACGTGGCTGGCTACGCGTTCGTGTTCGGCTGGGGCATCTGGTACCT
GGTCAAGATCGGCAAGCAAGGGCCCACCCCACATGCCAACGCGCCGCATCTGGATCATGGCGAACACACGCCGGCACGCC
CGCTTTCGGCAGCGGATGCACCGATCGATGGAGCGGCATGA

Upstream 100 bases:

>100_bases
CGTAGCGCAGCAGCCTGCTCGCGATCGCCCAATGCGCTGCATCCTGGCGATCGACCTGCAGCTTGCACGCCGACGATCAC
TTTTTCCTGGAGTGTGCTCC

Downstream 100 bases:

>100_bases
TGGACATGGCGACGGTACTGACGGTGGCGTGGTTTGCGGTGATCGGCTTCGGGGTGCTGATGTACGTGGTGCTGGACGGC
TTCGTCCTGGGCATCGGCAT

Product: quinol oxidase subunit I

Products: ubiquinone-8; H2O [C]

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MDALLLSRIQFGFVIAFHVLFPAFTIGLSSLLAFLEWRWLRTRLPVWRELYFFWQKIFAVSFGMGVVSGIVMAFQFGANW
PELSRIAGGVIGPLLSYEVLTAFFLEASFLGVMLFGWGRISERLHFFSSCMVALGTLVSTFWILSSNSWLQTPAGFDVIG
GIVHPVDWLKIIFNPSFPYRLAHMALGSFITTCFVVGAVGAWYLHRGVHRDAGLRMLKLAVVFAAITVPLQIFVGDMQGL
NTLKHQPMKIAAMEAHWHAEQPGEGFPLVVFALPDAQAERNDDEVAIPRLGSLILTHRLDGSIAPLTSVPASERPPVTPV
FFAFRIMVGIGSLMLLVAWVSAFALWRGKLVQWRWLLATWRWMLPSGFIALISGWFVTEIGRQPYVVYGLLRTADAVGPQ
SALMTTISLVVYVAGYAFVFGWGIWYLVKIGKQGPTPHANAPHLDHGEHTPARPLSAADAPIDGAA

Sequences:

>Translated_466_residues
MDALLLSRIQFGFVIAFHVLFPAFTIGLSSLLAFLEWRWLRTRLPVWRELYFFWQKIFAVSFGMGVVSGIVMAFQFGANW
PELSRIAGGVIGPLLSYEVLTAFFLEASFLGVMLFGWGRISERLHFFSSCMVALGTLVSTFWILSSNSWLQTPAGFDVIG
GIVHPVDWLKIIFNPSFPYRLAHMALGSFITTCFVVGAVGAWYLHRGVHRDAGLRMLKLAVVFAAITVPLQIFVGDMQGL
NTLKHQPMKIAAMEAHWHAEQPGEGFPLVVFALPDAQAERNDDEVAIPRLGSLILTHRLDGSIAPLTSVPASERPPVTPV
FFAFRIMVGIGSLMLLVAWVSAFALWRGKLVQWRWLLATWRWMLPSGFIALISGWFVTEIGRQPYVVYGLLRTADAVGPQ
SALMTTISLVVYVAGYAFVFGWGIWYLVKIGKQGPTPHANAPHLDHGEHTPARPLSAADAPIDGAA
>Mature_466_residues
MDALLLSRIQFGFVIAFHVLFPAFTIGLSSLLAFLEWRWLRTRLPVWRELYFFWQKIFAVSFGMGVVSGIVMAFQFGANW
PELSRIAGGVIGPLLSYEVLTAFFLEASFLGVMLFGWGRISERLHFFSSCMVALGTLVSTFWILSSNSWLQTPAGFDVIG
GIVHPVDWLKIIFNPSFPYRLAHMALGSFITTCFVVGAVGAWYLHRGVHRDAGLRMLKLAVVFAAITVPLQIFVGDMQGL
NTLKHQPMKIAAMEAHWHAEQPGEGFPLVVFALPDAQAERNDDEVAIPRLGSLILTHRLDGSIAPLTSVPASERPPVTPV
FFAFRIMVGIGSLMLLVAWVSAFALWRGKLVQWRWLLATWRWMLPSGFIALISGWFVTEIGRQPYVVYGLLRTADAVGPQ
SALMTTISLVVYVAGYAFVFGWGIWYLVKIGKQGPTPHANAPHLDHGEHTPARPLSAADAPIDGAA

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=512, Percent_Identity=30.859375, Blast_Score=234, Evalue=6e-63,
Organism=Escherichia coli, GI87081779, Length=318, Percent_Identity=31.7610062893082, Blast_Score=179, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 51585; Mature: 51585

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALLLSRIQFGFVIAFHVLFPAFTIGLSSLLAFLEWRWLRTRLPVWRELYFFWQKIFAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
SFGMGVVSGIVMAFQFGANWPELSRIAGGVIGPLLSYEVLTAFFLEASFLGVMLFGWGRI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SERLHFFSSCMVALGTLVSTFWILSSNSWLQTPAGFDVIGGIVHPVDWLKIIFNPSFPYR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
LAHMALGSFITTCFVVGAVGAWYLHRGVHRDAGLRMLKLAVVFAAITVPLQIFVGDMQGL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLKHQPMKIAAMEAHWHAEQPGEGFPLVVFALPDAQAERNDDEVAIPRLGSLILTHRLD
HHHHCCCCEEEEEEHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHCC
GSIAPLTSVPASERPPVTPVFFAFRIMVGIGSLMLLVAWVSAFALWRGKLVQWRWLLATW
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RWMLPSGFIALISGWFVTEIGRQPYVVYGLLRTADAVGPQSALMTTISLVVYVAGYAFVF
HHHHCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
GWGIWYLVKIGKQGPTPHANAPHLDHGEHTPARPLSAADAPIDGAA
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ubiquinol-8; O2 [C]

Specific reaction: ubiquinol-8 + O2 = ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]