Click here to switch to the map view.

The map label for this gene is yicC [H]

Identifier: 84622698

GI number: 84622698

Start: 1134365

End: 1135225

Strand: Direct

Name: yicC [H]

Synonym: XOO_1041

Alternate gene names: 84622698

Gene position: 1134365-1135225 (Clockwise)

Preceding gene: 84622686

Following gene: 84622699

Centisome position: 22.96

GC content: 66.2

Gene sequence:

>861_bases
ATGATCCGAAGCATGACCGCGTTTGCTGGCGGCGAACGCATCACACCCTGGGGCACGCTCGGTTGCGAGCTGCGCTCGGT
CAACCACCGCTTTCTGGAAGTGGGTGTGCGTCTGCCCGAGGAATTGCGTGCGCTGGAACCGCTGCTGCGCGAGCGCATTG
CGGCAAAAAACAGCCGCGGCAAGCTGGATCTGACGCTGCGCCTGCGGGCGCCGGAAAGCGCGCAGACGCTGGCGGTCAAC
GAATCGCTGCTGCAGGAACTGGGCGCGCTGGCCACGCGGCTGGATGGCCTGTTTCCCAAGCTGCAGGTGGGCTTCACCGA
TCTGTTGCAGCTGCCGGGTGTATTGCAGGTGCAGGACGTCGACGCTCCGGCGCTGCAGGCGCTGGCGCTGGCGTTGCTGG
ACGAACTGGTAGACAGCTTTGTGGCCGCGCGCGCGCGTGAAGGCGCCAAGCTGGCGGAGGCGATCAGCGAGCGGGTGGAT
GCCATCGAACGCATCGCCGCCGAGGTGCGCGTCTTGATCCCGGTGATCCGCGAAGGTCAGCGCGCCAAGCTGGCTGCACG
CCTGGCGGATCTACCGCATCCGGTGGATCCGGGCCGTGCCGAGCAGGAATTGGTGCTGTGGCTGCAGAAGCTCGATGTGG
ACGAGGAGCTCGACCGTCTGTCCAGCCACATCGCCGAGATCCGTCGCGTGCTCAAGCAGCGCGAGCCGGTCGGGCGCCGG
CTGGACTTCCTGCTGCAGGAGTTCAACCGCGAGGCCAACACGCTGGGCTCCAAGTCGGTGGACAGCCGCACCTCCAACGC
CGCGGTGGATCTCAAGGTGTTGATCGACCAGATCCGCGAGCAGGTGCAGAACATCGAATAG

Upstream 100 bases:

>100_bases
CCGGAAGTCGGGAGGTGGGTCTGGCGCCACTGCGCAGCGTGCAGGCAGCTGGCGAGGACGGCTAGGGTACCATTCGCGCT
TTGACGGCACGGGATTGACG

Downstream 100 bases:

>100_bases
CCGGGAATAGGCAATCGGGAATGGGGAATCGTCAAAGCGGGTACGATGCATCCCCTCGGCCTGCTTGCTTGGTGCGGTGC
CCCATTCCCTATTCTCGACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MIRSMTAFAGGERITPWGTLGCELRSVNHRFLEVGVRLPEELRALEPLLRERIAAKNSRGKLDLTLRLRAPESAQTLAVN
ESLLQELGALATRLDGLFPKLQVGFTDLLQLPGVLQVQDVDAPALQALALALLDELVDSFVAARAREGAKLAEAISERVD
AIERIAAEVRVLIPVIREGQRAKLAARLADLPHPVDPGRAEQELVLWLQKLDVDEELDRLSSHIAEIRRVLKQREPVGRR
LDFLLQEFNREANTLGSKSVDSRTSNAAVDLKVLIDQIREQVQNIE

Sequences:

>Translated_286_residues
MIRSMTAFAGGERITPWGTLGCELRSVNHRFLEVGVRLPEELRALEPLLRERIAAKNSRGKLDLTLRLRAPESAQTLAVN
ESLLQELGALATRLDGLFPKLQVGFTDLLQLPGVLQVQDVDAPALQALALALLDELVDSFVAARAREGAKLAEAISERVD
AIERIAAEVRVLIPVIREGQRAKLAARLADLPHPVDPGRAEQELVLWLQKLDVDEELDRLSSHIAEIRRVLKQREPVGRR
LDFLLQEFNREANTLGSKSVDSRTSNAAVDLKVLIDQIREQVQNIE
>Mature_286_residues
MIRSMTAFAGGERITPWGTLGCELRSVNHRFLEVGVRLPEELRALEPLLRERIAAKNSRGKLDLTLRLRAPESAQTLAVN
ESLLQELGALATRLDGLFPKLQVGFTDLLQLPGVLQVQDVDAPALQALALALLDELVDSFVAARAREGAKLAEAISERVD
AIERIAAEVRVLIPVIREGQRAKLAARLADLPHPVDPGRAEQELVLWLQKLDVDEELDRLSSHIAEIRRVLKQREPVGRR
LDFLLQEFNREANTLGSKSVDSRTSNAAVDLKVLIDQIREQVQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=287, Percent_Identity=46.3414634146341, Blast_Score=238, Evalue=3e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 31792; Mature: 31792

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSMTAFAGGERITPWGTLGCELRSVNHRFLEVGVRLPEELRALEPLLRERIAAKNSRG
CCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
KLDLTLRLRAPESAQTLAVNESLLQELGALATRLDGLFPKLQVGFTDLLQLPGVLQVQDV
CEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHCCCCEEEECC
DAPALQALALALLDELVDSFVAARAREGAKLAEAISERVDAIERIAAEVRVLIPVIREGQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RAKLAARLADLPHPVDPGRAEQELVLWLQKLDVDEELDRLSSHIAEIRRVLKQREPVGRR
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
LDFLLQEFNREANTLGSKSVDSRTSNAAVDLKVLIDQIREQVQNIE
HHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRSMTAFAGGERITPWGTLGCELRSVNHRFLEVGVRLPEELRALEPLLRERIAAKNSRG
CCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
KLDLTLRLRAPESAQTLAVNESLLQELGALATRLDGLFPKLQVGFTDLLQLPGVLQVQDV
CEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHCCCCEEEECC
DAPALQALALALLDELVDSFVAARAREGAKLAEAISERVDAIERIAAEVRVLIPVIREGQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RAKLAARLADLPHPVDPGRAEQELVLWLQKLDVDEELDRLSSHIAEIRRVLKQREPVGRR
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
LDFLLQEFNREANTLGSKSVDSRTSNAAVDLKVLIDQIREQVQNIE
HHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2664418; 7686882; 9278503; 1925027 [H]