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The map label for this gene is ygfB [C]

Identifier: 84622685

GI number: 84622685

Start: 1123317

End: 1123859

Strand: Direct

Name: ygfB [C]

Synonym: XOO_1028

Alternate gene names: 84622685

Gene position: 1123317-1123859 (Clockwise)

Preceding gene: 84622677

Following gene: 84622686

Centisome position: 22.74

GC content: 68.32

Gene sequence:

>543_bases
ATGGATCTGCCCGACGTAACCGCTGTGCAAAACGAAAGCCGTCAGCTGGCGCTGGCGTCCTCCGCGGCGGAGTTGCATGG
TGGGCTGTGCGGGTGGCTCTCCGGCGGCGGTGCCGACAGCGCCGACTGGCTGGCGCGCATTCTGGCCGACACCGGCCAGG
TCGCCCCCAAGCAGGGCGGGGCGCTGGACCAGCTGCGGCAGGCCACCGTGGCGCAGATGGAAGACCGCGATTTCGCCTTC
GAGCTGCTATTGGTCGAAGACGGCGCCCCGCTGGCGGCGCGGACCGATGCCTTGTTCGATTGGTGCCGCGCCTTCCTGGG
CGGATTCGGTTTGGCTGCGCAGCAGCGTCCGGCGCTGAGCGAAGAAGGCGAGGAAGCGCTGCAGGACCTTGCGCGTCTGG
CGCAGGCGTCCAGCGACGACTTCGACGCGGCCGACGAGGACGATACCGCCTTGGCCGAGATCGAAGAATTCGTGCGCGTG
GCGGTGCTGTTGCTGCATGGCGACTGCGTGATGGGGCCGCGTTTCCGCCAACGTCTGAACTGA

Upstream 100 bases:

>100_bases
CGCGCAGATCGCGGCCGATGCGGGCTGCCCTGATACACTGAGAAGTCATATCGCCGGTCCCTGAATCGGCACCTTTTTGT
TCTTCAGCCTGGATGACTCG

Downstream 100 bases:

>100_bases
TCGGTCCCCCATGAAAAAGCTCACCGGGATCGGCGCGGCCGAGTACGCGCGCCGGCGCAAGCAGCTGATGCAGATGGCTG
GCGAGCAGGCGATTCTGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MDLPDVTAVQNESRQLALASSAAELHGGLCGWLSGGGADSADWLARILADTGQVAPKQGGALDQLRQATVAQMEDRDFAF
ELLLVEDGAPLAARTDALFDWCRAFLGGFGLAAQQRPALSEEGEEALQDLARLAQASSDDFDAADEDDTALAEIEEFVRV
AVLLLHGDCVMGPRFRQRLN

Sequences:

>Translated_180_residues
MDLPDVTAVQNESRQLALASSAAELHGGLCGWLSGGGADSADWLARILADTGQVAPKQGGALDQLRQATVAQMEDRDFAF
ELLLVEDGAPLAARTDALFDWCRAFLGGFGLAAQQRPALSEEGEEALQDLARLAQASSDDFDAADEDDTALAEIEEFVRV
AVLLLHGDCVMGPRFRQRLN
>Mature_180_residues
MDLPDVTAVQNESRQLALASSAAELHGGLCGWLSGGGADSADWLARILADTGQVAPKQGGALDQLRQATVAQMEDRDFAF
ELLLVEDGAPLAARTDALFDWCRAFLGGFGLAAQQRPALSEEGEEALQDLARLAQASSDDFDAADEDDTALAEIEEFVRV
AVLLLHGDCVMGPRFRQRLN

Specific function: Unknown

COG id: COG3079

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0149 family

Homologues:

Organism=Escherichia coli, GI87082182, Length=177, Percent_Identity=31.638418079096, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1028_XANOM (Q2P6P4)

Other databases:

- EMBL:   AP008229
- RefSeq:   YP_450057.1
- ProteinModelPortal:   Q2P6P4
- SMR:   Q2P6P4
- STRING:   Q2P6P4
- GeneID:   3858292
- GenomeReviews:   AP008229_GR
- KEGG:   xom:XOO_1028
- eggNOG:   COG3079
- HOGENOM:   HBG701093
- OMA:   ELMNDGQ
- PhylomeDB:   Q2P6P4
- ProtClustDB:   PRK04758
- BioCyc:   XORY342109:XOO1028-MONOMER
- HAMAP:   MF_00346
- InterPro:   IPR011978

Pfam domain/function: PF03695 UPF0149; SSF101327 YgfB_YecA

EC number: NA

Molecular weight: Translated: 19230; Mature: 19230

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLPDVTAVQNESRQLALASSAAELHGGLCGWLSGGGADSADWLARILADTGQVAPKQGG
CCCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCC
ALDQLRQATVAQMEDRDFAFELLLVEDGAPLAARTDALFDWCRAFLGGFGLAAQQRPALS
HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
EEGEEALQDLARLAQASSDDFDAADEDDTALAEIEEFVRVAVLLLHGDCVMGPRFRQRLN
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC
>Mature Secondary Structure
MDLPDVTAVQNESRQLALASSAAELHGGLCGWLSGGGADSADWLARILADTGQVAPKQGG
CCCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCC
ALDQLRQATVAQMEDRDFAFELLLVEDGAPLAARTDALFDWCRAFLGGFGLAAQQRPALS
HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
EEGEEALQDLARLAQASSDDFDAADEDDTALAEIEEFVRVAVLLLHGDCVMGPRFRQRLN
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA