| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84621897
Identifier: 84621897
GI number: 84621897
Start: 264760
End: 265317
Strand: Direct
Name: 84621897
Synonym: XOO_0240
Alternate gene names: NA
Gene position: 264760-265317 (Clockwise)
Preceding gene: 84621896
Following gene: 84621898
Centisome position: 5.36
GC content: 65.23
Gene sequence:
>558_bases ATGGGGGGACATCGCGGCGACAACGACCACCGCCTGACCTACATTCACCTGGGCATCGTCGCCAGCCTGCTGCTGAACTC CAAGGCGGTGGATTTCGTGGTCGCTGGTTGCGGCACCGGCCAGGGCGCGATGATGTCGCTCAACGCGCACCCGGGCGTGT TTTGCGGCTACTGCATCGAGCCGACTGACGCCTACCTGTTCGCCCAGGTCAACAACGGCAACGCGCTGTCGCTGGCCTTC GCCAAGGGCTACGGCTGGGGCGCGGAAATCAACGTGCGCTACATCTTCGAAAAGGCCTTCAGCGGCGAGCGCGGCATGGG CTACCCAGCCGAGCGTCGCGAATCGCAGGCGGCCAACGCCGGCATCCTGACCCAGGTCAAGCAGGCCACCGCCAAGTCGT ACCTGGACGGCCTGCGCGCCATCGACCCGGAACTGATCAAGCAGGCCATCGGCGGCGCGCGTTTCCAGCAGTGTTTCTTC GAGAACGCGCAGGATGCGGAAATCCGCAACTTTGTCGCCGGCCTGCTGGGGAAGACTGAAGCCGCTGCTGCCGCGTAA
Upstream 100 bases:
>100_bases CAAAAAAACAATCGGCGCAATGACGCCGGCGGCCTATGCCCAGCAGTTGGCCAATAGCGATATCATCACCCCCGGACTCT AAACCCGACTGCTACTCAGG
Downstream 100 bases:
>100_bases TCGCCCAAGCCCCTCTCCTGCTGGGCGAAAGGGCAGGACTGGCGCGCCACCGGCGCGCCTGCCTTCACGTGCCCACGCTG CAAGGCGTGGGCCGAGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Ribose 5-Phosphate Isomerase; Sugar-Phosphate Isomerase; Sugar-Phosphate Isomerase LacAB/RpiB Family; Ribose 5-Phosphate Isomerase RpiB; Galactose-6-Phosphate Isomerase; LOW QUALITY PROTEIN Sugar-Phosphate Isomerase; Ypothetical Protein SMU.
Number of amino acids: Translated: 185; Mature: 184
Protein sequence:
>185_residues MGGHRGDNDHRLTYIHLGIVASLLLNSKAVDFVVAGCGTGQGAMMSLNAHPGVFCGYCIEPTDAYLFAQVNNGNALSLAF AKGYGWGAEINVRYIFEKAFSGERGMGYPAERRESQAANAGILTQVKQATAKSYLDGLRAIDPELIKQAIGGARFQQCFF ENAQDAEIRNFVAGLLGKTEAAAAA
Sequences:
>Translated_185_residues MGGHRGDNDHRLTYIHLGIVASLLLNSKAVDFVVAGCGTGQGAMMSLNAHPGVFCGYCIEPTDAYLFAQVNNGNALSLAF AKGYGWGAEINVRYIFEKAFSGERGMGYPAERRESQAANAGILTQVKQATAKSYLDGLRAIDPELIKQAIGGARFQQCFF ENAQDAEIRNFVAGLLGKTEAAAAA >Mature_184_residues GGHRGDNDHRLTYIHLGIVASLLLNSKAVDFVVAGCGTGQGAMMSLNAHPGVFCGYCIEPTDAYLFAQVNNGNALSLAFA KGYGWGAEINVRYIFEKAFSGERGMGYPAERRESQAANAGILTQVKQATAKSYLDGLRAIDPELIKQAIGGARFQQCFFE NAQDAEIRNFVAGLLGKTEAAAAA
Specific function: Unknown
COG id: COG0698
COG function: function code G; Ribose 5-phosphate isomerase RpiB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19698; Mature: 19566
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGHRGDNDHRLTYIHLGIVASLLLNSKAVDFVVAGCGTGQGAMMSLNAHPGVFCGYCIE CCCCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEC PTDAYLFAQVNNGNALSLAFAKGYGWGAEINVRYIFEKAFSGERGMGYPAERRESQAANA CCCEEEEEEECCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCC GILTQVKQATAKSYLDGLRAIDPELIKQAIGGARFQQCFFENAQDAEIRNFVAGLLGKTE HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCH AAAAA HHHCC >Mature Secondary Structure GGHRGDNDHRLTYIHLGIVASLLLNSKAVDFVVAGCGTGQGAMMSLNAHPGVFCGYCIE CCCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEC PTDAYLFAQVNNGNALSLAFAKGYGWGAEINVRYIFEKAFSGERGMGYPAERRESQAANA CCCEEEEEEECCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCC GILTQVKQATAKSYLDGLRAIDPELIKQAIGGARFQQCFFENAQDAEIRNFVAGLLGKTE HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCH AAAAA HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA