| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is nagJ [H]
Identifier: 84621846
GI number: 84621846
Start: 199430
End: 201415
Strand: Direct
Name: nagJ [H]
Synonym: XOO_0189
Alternate gene names: 84621846
Gene position: 199430-201415 (Clockwise)
Preceding gene: 84621845
Following gene: 84621848
Centisome position: 4.04
GC content: 65.91
Gene sequence:
>1986_bases ATGACGCGACGCAACAGCAAGCCGGGCGTGCGCCTGCTTTCGGTATTGGTGGCGCTGGGCATGGCTGCCCCGGCGTTGGC GCAGGCGGTGACCGAACCGGTCACCCAGCCCGCGATCTATCCGACGCCGGTATCGATCACGCTGGACGGCGCGACCATCG CGCTGGGCCGCTCGGTGGTGCTGGTGGTCGCGCCGGGCGCGGACAAGGCCACAGTCGCGCTGGTGCGCAGCATTCTCAGC AGCGCCGGGGTCACCAAAATGGCGACCGCCACGCGCTTGCCTGCCACGCTGGACCGCCCGCACATCGTGCTCGGCACCGG CGATGCGGCAGTGGTGCGCGATGCGCTGGCGCGTAGCAAGGCGAGGCAGGATACCCACAAGGAGGGCTATACGCTGGCCA GCGTTGCGCTCGATGGCGGCAGCCTGATCACGCTGGCCGGCCACGACGACGATGGCCTGTTCCATGCGGCGCAGACGCTG CGGCAGCTGGTCGAGCGGCCGGCCATCCCGACGCTGACGATCCATGATTACCCGGCCATGCCGATCCGCGGCACCATCGA AGGCTTCTACGGCGCGCCGTGGTCGATGAGCGATCGCAGCAAGCACATCGATTTCCTTGCCCGCACCAAGGCCAACACCT TCATCTATAGCCCGAAAGACGACCCTTACGCGCGCGATCGCTGGCGCGCGCCGTACCCGAAGGCGACCTTGAAAGCACTC GGCCAGCTGGCCGCTACCGCCAAGCGCAATCACGTCGATTTCGTCTATGCGATTTCGCCGGGACCGACGGTCTGTTTCTC CGACCCGGCCGATGCCAAGGCGTTGCTGCGCAAGTTTGATGCGTTCCGCGCGCTGGGTGTGCGCAGCTTCTATGTGGCGC TGGACGATATCGAATACACCAAGTGGAATTGCGAGCGCGACAAGACCGCCTTCGGCGAGTCCGGTGCGCAGGCAGCAGGT ATCGCGCAGTCGCACCTGCTCAACCTGGTGCAAGCCGATCTGGTTGCGCGCCACGATGCAACCTCGGAACTGATCATGGT GCCCACCGAGTACTACGACGCCAAAGAGAGCCCGTACAAGGAAGCGCTGCGCAAGCACCTGGACCCGAAGATCGTGGTGC AGTGGACCGGTACCGACGTGGTGCCGCCGGCCATTTCCATCCCCGATGCGCGTGCGGCCACCAAGGCGTTCGGTCGTAAG ACGCTGCTATGGGACAACTACCCGGTCAACGATTTCGAAACCTCGGCCGGGCGCTTGCTGATGGCGCCGTATGCACGGCG CGAGGCCGGCCTGTCGGCCGAGTTGTCCGGCATCGTGTCCAATCCGATGAATCAGGAAGTACCCAGCCGCGTCGCAGTGA TGGGGCTGACCGCGTTCGCCTGGAACGACAAAGACTACGACGCGCAACGCACCTGGCATGCGGCAGCGCGCGATCTGGCC GGCGGCGATGCGCGTGTCACTGCGGCATTGCTGATCTTCTTCGATACCCAGCACTTGGCGCCAACCTTCGGCAGCCAACC GTGGCAGGAACAGGCGCCACGCTTGAAGGCCGTGCTTGATCATGTGCGCGAGGCGATCGCGCTTGGCGATGCCGCAGCGC GCACCCAGGCGATTGCCGAACTGGCACGCACTGCAGACGAAATGGCTGCCGCGCCGCAGATCATTCGCGATAGCGTCGCC GACAAGGGTTTTGCCAAGCAATCGCGCCCGTGGCTGGAGGCAATGGAAGTCTGGGGCGGCGCGTTGCAGAAGACGGCAGC CGGGCTGGATGCGGCAAATCGCGGCGACACGCAGGCGCCCGCGTTGTTTGCCGAGGCGGCTGCACACGCCGCTGTCGCTG CTGTGGTTCCGTCGATTCCCGGCGCCACGCGCTTCGATGGCCCGGTCAAGATCGCCGACGGCGTACTCGACCGCTTCATC GCGCAGGCGCCGCGCTTGATCGCTTATCGCGTGCCGGCAGTTGCCGATTCGGCAGCAGCGAAGTGA
Upstream 100 bases:
>100_bases AGAAAACAACCCGTCCCGGACACAGGTACGGCGCCGCTTGTCGCCGCCCCGCGACTTGCCTACTCTAGGGCGTAATACCA TTCCAATACCGGAGTTCGAG
Downstream 100 bases:
>100_bases TGGCTTAGTGCAGAGGCACAGCTGCGCGCATGGGCGACTGTTCGCGTATTTAGAGCGGCGAACAAACCGCAGCGAGCCGC TGTCAGGTGGGCGCGGACGG
Product: hypothetical protein
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; Beta-hexosaminidase; GH84; Hexosaminidase B; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 661; Mature: 660
Protein sequence:
>661_residues MTRRNSKPGVRLLSVLVALGMAAPALAQAVTEPVTQPAIYPTPVSITLDGATIALGRSVVLVVAPGADKATVALVRSILS SAGVTKMATATRLPATLDRPHIVLGTGDAAVVRDALARSKARQDTHKEGYTLASVALDGGSLITLAGHDDDGLFHAAQTL RQLVERPAIPTLTIHDYPAMPIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWRAPYPKATLKAL GQLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYTKWNCERDKTAFGESGAQAAG IAQSHLLNLVQADLVARHDATSELIMVPTEYYDAKESPYKEALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRK TLLWDNYPVNDFETSAGRLLMAPYARREAGLSAELSGIVSNPMNQEVPSRVAVMGLTAFAWNDKDYDAQRTWHAAARDLA GGDARVTAALLIFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAAARTQAIAELARTADEMAAAPQIIRDSVA DKGFAKQSRPWLEAMEVWGGALQKTAAGLDAANRGDTQAPALFAEAAAHAAVAAVVPSIPGATRFDGPVKIADGVLDRFI AQAPRLIAYRVPAVADSAAAK
Sequences:
>Translated_661_residues MTRRNSKPGVRLLSVLVALGMAAPALAQAVTEPVTQPAIYPTPVSITLDGATIALGRSVVLVVAPGADKATVALVRSILS SAGVTKMATATRLPATLDRPHIVLGTGDAAVVRDALARSKARQDTHKEGYTLASVALDGGSLITLAGHDDDGLFHAAQTL RQLVERPAIPTLTIHDYPAMPIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWRAPYPKATLKAL GQLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYTKWNCERDKTAFGESGAQAAG IAQSHLLNLVQADLVARHDATSELIMVPTEYYDAKESPYKEALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRK TLLWDNYPVNDFETSAGRLLMAPYARREAGLSAELSGIVSNPMNQEVPSRVAVMGLTAFAWNDKDYDAQRTWHAAARDLA GGDARVTAALLIFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAAARTQAIAELARTADEMAAAPQIIRDSVA DKGFAKQSRPWLEAMEVWGGALQKTAAGLDAANRGDTQAPALFAEAAAHAAVAAVVPSIPGATRFDGPVKIADGVLDRFI AQAPRLIAYRVPAVADSAAAK >Mature_660_residues TRRNSKPGVRLLSVLVALGMAAPALAQAVTEPVTQPAIYPTPVSITLDGATIALGRSVVLVVAPGADKATVALVRSILSS AGVTKMATATRLPATLDRPHIVLGTGDAAVVRDALARSKARQDTHKEGYTLASVALDGGSLITLAGHDDDGLFHAAQTLR QLVERPAIPTLTIHDYPAMPIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWRAPYPKATLKALG QLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYTKWNCERDKTAFGESGAQAAGI AQSHLLNLVQADLVARHDATSELIMVPTEYYDAKESPYKEALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRKT LLWDNYPVNDFETSAGRLLMAPYARREAGLSAELSGIVSNPMNQEVPSRVAVMGLTAFAWNDKDYDAQRTWHAAARDLAG GDARVTAALLIFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAAARTQAIAELARTADEMAAAPQIIRDSVAD KGFAKQSRPWLEAMEVWGGALQKTAAGLDAANRGDTQAPALFAEAAAHAAVAAVVPSIPGATRFDGPVKIADGVLDRFIA QAPRLIAYRVPAVADSAAAK
Specific function: Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
Organism=Homo sapiens, GI215490056, Length=310, Percent_Identity=30.9677419354839, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI11024698, Length=279, Percent_Identity=32.6164874551971, Blast_Score=154, Evalue=4e-37, Organism=Caenorhabditis elegans, GI193211004, Length=318, Percent_Identity=29.2452830188679, Blast_Score=142, Evalue=8e-34, Organism=Caenorhabditis elegans, GI193211002, Length=314, Percent_Identity=28.6624203821656, Blast_Score=141, Evalue=9e-34, Organism=Drosophila melanogaster, GI24648670, Length=297, Percent_Identity=29.2929292929293, Blast_Score=130, Evalue=4e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR011496 - InterPro: IPR008965 - InterPro: IPR000421 - InterPro: IPR018452 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR008979 - InterPro: IPR017853 - InterPro: IPR013783 [H]
Pfam domain/function: PF00754 F5_F8_type_C; PF00041 fn3; PF02838 Glyco_hydro_20b; PF07555 NAGidase [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 70752; Mature: 70621
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRNSKPGVRLLSVLVALGMAAPALAQAVTEPVTQPAIYPTPVSITLDGATIALGRSVV CCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCEEE LVVAPGADKATVALVRSILSSAGVTKMATATRLPATLDRPHIVLGTGDAAVVRDALARSK EEEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHH ARQDTHKEGYTLASVALDGGSLITLAGHDDDGLFHAAQTLRQLVERPAIPTLTIHDYPAM HHHHHHHCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC PIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWRAPYPKATLKAL CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH GQLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYT HHHHHHHCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCEEC KWNCERDKTAFGESGAQAAGIAQSHLLNLVQADLVARHDATSELIMVPTEYYDAKESPYK CCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCHHH EALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRKTLLWDNYPVNDFETSAGRLL HHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCEE MAPYARREAGLSAELSGIVSNPMNQEVPSRVAVMGLTAFAWNDKDYDAQRTWHAAARDLA ECCHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCC GGDARVTAALLIFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAAARTQAIAE CCCHHHEEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH LARTADEMAAAPQIIRDSVADKGFAKQSRPWLEAMEVWGGALQKTAAGLDAANRGDTQAP HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH ALFAEAAAHAAVAAVVPSIPGATRFDGPVKIADGVLDRFIAQAPRLIAYRVPAVADSAAA HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC K C >Mature Secondary Structure TRRNSKPGVRLLSVLVALGMAAPALAQAVTEPVTQPAIYPTPVSITLDGATIALGRSVV CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCEEE LVVAPGADKATVALVRSILSSAGVTKMATATRLPATLDRPHIVLGTGDAAVVRDALARSK EEEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHH ARQDTHKEGYTLASVALDGGSLITLAGHDDDGLFHAAQTLRQLVERPAIPTLTIHDYPAM HHHHHHHCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC PIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWRAPYPKATLKAL CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH GQLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYT HHHHHHHCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCEEC KWNCERDKTAFGESGAQAAGIAQSHLLNLVQADLVARHDATSELIMVPTEYYDAKESPYK CCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCHHH EALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRKTLLWDNYPVNDFETSAGRLL HHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCEE MAPYARREAGLSAELSGIVSNPMNQEVPSRVAVMGLTAFAWNDKDYDAQRTWHAAARDLA ECCHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCC GGDARVTAALLIFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAAARTQAIAE CCCHHHEEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH LARTADEMAAAPQIIRDSVADKGFAKQSRPWLEAMEVWGGALQKTAAGLDAANRGDTQAP HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH ALFAEAAAHAAVAAVVPSIPGATRFDGPVKIADGVLDRFIAQAPRLIAYRVPAVADSAAA HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA