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The map label for this gene is rpl21e

Identifier: 84490320

GI number: 84490320

Start: 1722153

End: 1722443

Strand: Direct

Name: rpl21e

Synonym: Msp_1542

Alternate gene names: 84490320

Gene position: 1722153-1722443 (Clockwise)

Preceding gene: 84490319

Following gene: 84490321

Centisome position: 97.44

GC content: 31.27

Gene sequence:

>291_bases
ATGAGAAAATCAAAAGGATTTAAAAGTCGATCAAGATATAAACTTAAAAGAAGCATCAGACCTAAACGAGCTAATCCAAT
ATCCAGAAAAATACAAGTATTTGAAGTAGGAAACAAAGTACATATAATAGTAGATTCAAGTATCCACAGAGGACAACCAC
ATCCAAGATTCCATGGAAAAACTGGAGAAGTAGTTGGACAAAAAGGAAAAGCTTATCTTGTTGCTATTAAAGATGGAAAC
AAAGCAAAAGAATTAATTATAAGACCAGAACATCTTAAATTACAAGAGTGA

Upstream 100 bases:

>100_bases
GCTAAAGTCAAACCTAAGACTTATAATTAAACCTATAAAAGTGATTAAATTTAAATCACAAAAAATAAATTAAATTCTAA
ACATAATTGAGATGATATAG

Downstream 100 bases:

>100_bases
TTATGATGATTGGAAAAAAAGTCATTGATACAAAACCTATTACAATATCTGAAGCAAAAGAAATTCTAATGAAAAAAGTA
GAAGAAAAAGTGGATGAAAA

Product: 50S ribosomal protein L21e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MRKSKGFKSRSRYKLKRSIRPKRANPISRKIQVFEVGNKVHIIVDSSIHRGQPHPRFHGKTGEVVGQKGKAYLVAIKDGN
KAKELIIRPEHLKLQE

Sequences:

>Translated_96_residues
MRKSKGFKSRSRYKLKRSIRPKRANPISRKIQVFEVGNKVHIIVDSSIHRGQPHPRFHGKTGEVVGQKGKAYLVAIKDGN
KAKELIIRPEHLKLQE
>Mature_96_residues
MRKSKGFKSRSRYKLKRSIRPKRANPISRKIQVFEVGNKVHIIVDSSIHRGQPHPRFHGKTGEVVGQKGKAYLVAIKDGN
KAKELIIRPEHLKLQE

Specific function: Unknown

COG id: COG2139

COG function: function code J; Ribosomal protein L21E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL21_METST (Q2NE44)

Other databases:

- EMBL:   CP000102
- RefSeq:   YP_448552.1
- ProteinModelPortal:   Q2NE44
- SMR:   Q2NE44
- STRING:   Q2NE44
- GeneID:   3854847
- GenomeReviews:   CP000102_GR
- KEGG:   mst:Msp_1542
- NMPDR:   fig|339860.6.peg.1475
- eggNOG:   arNOG13006
- HOGENOM:   HBG497499
- OMA:   RFHGKTG
- PhylomeDB:   Q2NE44
- ProtClustDB:   PRK04306
- BioCyc:   MSTA339860:MSP_1542-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00369
- InterPro:   IPR001147
- InterPro:   IPR022856
- InterPro:   IPR008991
- PANTHER:   PTHR20981

Pfam domain/function: PF01157 Ribosomal_L21e; SSF50104 Transl_SH3_like

EC number: NA

Molecular weight: Translated: 11033; Mature: 11033

Theoretical pI: Translated: 11.76; Mature: 11.76

Prosite motif: PS01171 RIBOSOMAL_L21E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSKGFKSRSRYKLKRSIRPKRANPISRKIQVFEVGNKVHIIVDSSIHRGQPHPRFHGK
CCCCCCCCCCHHHHHHHCCCCCCCCCCHHEEEEEEECCEEEEEEECCCCCCCCCCCCCCC
TGEVVGQKGKAYLVAIKDGNKAKELIIRPEHLKLQE
CCCEECCCCCEEEEEECCCCCCEEEEECCCCEEECC
>Mature Secondary Structure
MRKSKGFKSRSRYKLKRSIRPKRANPISRKIQVFEVGNKVHIIVDSSIHRGQPHPRFHGK
CCCCCCCCCCHHHHHHHCCCCCCCCCCHHEEEEEEECCEEEEEEECCCCCCCCCCCCCCC
TGEVVGQKGKAYLVAIKDGNKAKELIIRPEHLKLQE
CCCEECCCCCEEEEEECCCCCCEEEEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA