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The map label for this gene is 84490126

Identifier: 84490126

GI number: 84490126

Start: 1505404

End: 1506105

Strand: Direct

Name: 84490126

Synonym: Msp_1338

Alternate gene names: NA

Gene position: 1505404-1506105 (Clockwise)

Preceding gene: 84490125

Following gene: 84490127

Centisome position: 85.18

GC content: 28.35

Gene sequence:

>702_bases
ATGGTTAACACAGAATACCTTAAAATTCCGAAAGATAGAGTCGGTGTAACAATTGGTAAAAATGGAAAAATAAAACATCA
ATTAGAAATTATTACAAAAACAGAACTTAAAATTGATAGTGATACTGGAAATATTGCTATAAGTTCTACTGATGAAACAG
ATGATCCTTTAGCAATTTGGAAAGCTAGATATATGATTAAAGCTATTGGAAGAGGATTCAATCCTGATATTGCTTTAACT
CTTGAAAATGATGATTTAATTTTGGAAATTATTAATTTACAAGATTATGTTGGAAAATCTAAAAAAGCTTTAGTAAGACA
AAAAGGTAGAATCATTGGTAAAAATGGAAGAACAAGACAAATCATGCATGATATGCTTGATGTTGAAATTAGTATCTATG
GTAAAACAGTATCTTTAATTGGAGAAATTGAAAATATACAAATGGCAAGAGAAGCTATTGAAATGATACTTGAAGGATCT
AGACAAAAAACTGTATATGCATATCTTGAAAAAATGCATGATAAACTTAAAAGAAAAGAATTTGATGAAATGGTTAATGG
TAAACCAGACATGAAAGATATTTTAAGAGAAGACCTGGATACTGATGAAGACTTCACTGATGCTGAGGAAGATTACAATA
AGAATGCTATTAGTGAAGATGATGAAGATAATGAATTTGAAGAAGAATCTGAAACCTTGTAA

Upstream 100 bases:

>100_bases
TTATCATAAACCTTCTTATTTATTCATAAATACGATTAATCAATCGATTTATATTATTACTATTAGAGAAGACTAGAAGT
TATAAAGGAGCTTTTTTATA

Downstream 100 bases:

>100_bases
AAAATCTCTTTTTACATTTTTTTTTATTATTATTTTTACATTATTAAAATAAGTGATTATATAAAAATCTATTTAAATAT
TTTTACTAACAACTATTACT

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MVNTEYLKIPKDRVGVTIGKNGKIKHQLEIITKTELKIDSDTGNIAISSTDETDDPLAIWKARYMIKAIGRGFNPDIALT
LENDDLILEIINLQDYVGKSKKALVRQKGRIIGKNGRTRQIMHDMLDVEISIYGKTVSLIGEIENIQMAREAIEMILEGS
RQKTVYAYLEKMHDKLKRKEFDEMVNGKPDMKDILREDLDTDEDFTDAEEDYNKNAISEDDEDNEFEEESETL

Sequences:

>Translated_233_residues
MVNTEYLKIPKDRVGVTIGKNGKIKHQLEIITKTELKIDSDTGNIAISSTDETDDPLAIWKARYMIKAIGRGFNPDIALT
LENDDLILEIINLQDYVGKSKKALVRQKGRIIGKNGRTRQIMHDMLDVEISIYGKTVSLIGEIENIQMAREAIEMILEGS
RQKTVYAYLEKMHDKLKRKEFDEMVNGKPDMKDILREDLDTDEDFTDAEEDYNKNAISEDDEDNEFEEESETL
>Mature_233_residues
MVNTEYLKIPKDRVGVTIGKNGKIKHQLEIITKTELKIDSDTGNIAISSTDETDDPLAIWKARYMIKAIGRGFNPDIALT
LENDDLILEIINLQDYVGKSKKALVRQKGRIIGKNGRTRQIMHDMLDVEISIYGKTVSLIGEIENIQMAREAIEMILEGS
RQKTVYAYLEKMHDKLKRKEFDEMVNGKPDMKDILREDLDTDEDFTDAEEDYNKNAISEDDEDNEFEEESETL

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6324720, Length=129, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319791, Length=117, Percent_Identity=28.2051282051282, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 26719; Mature: 26719

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNTEYLKIPKDRVGVTIGKNGKIKHQLEIITKTELKIDSDTGNIAISSTDETDDPLAIW
CCCCCEEECCHHHCCEEECCCCCEEEEEEEEEEEEEEEECCCCCEEEECCCCCCCHHHHH
KARYMIKAIGRGFNPDIALTLENDDLILEIINLQDYVGKSKKALVRQKGRIIGKNGRTRQ
HHHHHHHHHCCCCCCCEEEEECCCCEEEEEECHHHHHCCHHHHHHHHCCCEECCCCCHHH
IMHDMLDVEISIYGKTVSLIGEIENIQMAREAIEMILEGSRQKTVYAYLEKMHDKLKRKE
HHHHHHHCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FDEMVNGKPDMKDILREDLDTDEDFTDAEEDYNKNAISEDDEDNEFEEESETL
HHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MVNTEYLKIPKDRVGVTIGKNGKIKHQLEIITKTELKIDSDTGNIAISSTDETDDPLAIW
CCCCCEEECCHHHCCEEECCCCCEEEEEEEEEEEEEEEECCCCCEEEECCCCCCCHHHHH
KARYMIKAIGRGFNPDIALTLENDDLILEIINLQDYVGKSKKALVRQKGRIIGKNGRTRQ
HHHHHHHHHCCCCCCCEEEEECCCCEEEEEECHHHHHCCHHHHHHHHCCCEECCCCCHHH
IMHDMLDVEISIYGKTVSLIGEIENIQMAREAIEMILEGSRQKTVYAYLEKMHDKLKRKE
HHHHHHHCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FDEMVNGKPDMKDILREDLDTDEDFTDAEEDYNKNAISEDDEDNEFEEESETL
HHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]