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The map label for this gene is 84490037

Identifier: 84490037

GI number: 84490037

Start: 1417423

End: 1418118

Strand: Direct

Name: 84490037

Synonym: Msp_1249

Alternate gene names: NA

Gene position: 1417423-1418118 (Clockwise)

Preceding gene: 84490036

Following gene: 84490038

Centisome position: 80.2

GC content: 32.61

Gene sequence:

>696_bases
ATGGTTAATGTTGATGATGCAGTAATCGCACGTTTAGAAAGATATGGTGAAAGATTTGAAATATTAGTAGATGCTGAACT
TGCTGCAGATTATAAAAGAGGAGAAGACATTGATATCTCCAAAGTAATAGCTGTTGAAGAAGTATTTAAAGATGCACATA
AAGCAGACAAAGCCTCAGAAGAAGCTATGGAAAAAGCATTCGAAACTACAGATGCATTAGAAGTAGCTGATAAAATCATA
CATAAAGGCCAAATACAAATTACAGCAAATCAAAAACGTAAAATGCAAGAAGAAAAAACTAAACAAGTTATTAACCAAAT
AGCTCGTGAAGCAATAAATCCACAAACAAAACTTCCCCATCCACCAAAACGTATAGCAAAAGCTATGGAAGAAGCAAAAG
TACATATTGATCCAATGAAAACTGTAGAAGAACAAATTGCACCTACTGTAAAAGCAATTTTAACAAAAATACCAATAAGA
ATAGAAAAAGTACAAGTTGCAGTTAAAATTCCTGGAACATATGCTGGAAAAGGATATTCTACAATAACCCAATATGGTAA
ATTAATTAAAGAAGAATGGGAAAATGATGGAAGTTGGATTGGTATTGTAGAAATCCCTGGAGGACTACAAGATGAATTTT
ACACAGCACTAAGTGGTCTAACACATGGAGAGGTTGAAACCAAATTAATTAAATAG

Upstream 100 bases:

>100_bases
AAATAAGATAAAATATAATAATATATAACGAATAAGGAAATAAATTTTTATAAATTAAAAAAATAACAAAATCCAATAAT
TAAAATAAATAGGTGAAACT

Downstream 100 bases:

>100_bases
ATTGAAGTGTATCTATGATATTTGTAGAAAATAAAGAAATAGTACTACCAGGTAGTTTATTAACAGACAATAATTATAAA
CTAGGTAGAGGTACTTATAA

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MVNVDDAVIARLERYGERFEILVDAELAADYKRGEDIDISKVIAVEEVFKDAHKADKASEEAMEKAFETTDALEVADKII
HKGQIQITANQKRKMQEEKTKQVINQIAREAINPQTKLPHPPKRIAKAMEEAKVHIDPMKTVEEQIAPTVKAILTKIPIR
IEKVQVAVKIPGTYAGKGYSTITQYGKLIKEEWENDGSWIGIVEIPGGLQDEFYTALSGLTHGEVETKLIK

Sequences:

>Translated_231_residues
MVNVDDAVIARLERYGERFEILVDAELAADYKRGEDIDISKVIAVEEVFKDAHKADKASEEAMEKAFETTDALEVADKII
HKGQIQITANQKRKMQEEKTKQVINQIAREAINPQTKLPHPPKRIAKAMEEAKVHIDPMKTVEEQIAPTVKAILTKIPIR
IEKVQVAVKIPGTYAGKGYSTITQYGKLIKEEWENDGSWIGIVEIPGGLQDEFYTALSGLTHGEVETKLIK
>Mature_231_residues
MVNVDDAVIARLERYGERFEILVDAELAADYKRGEDIDISKVIAVEEVFKDAHKADKASEEAMEKAFETTDALEVADKII
HKGQIQITANQKRKMQEEKTKQVINQIAREAINPQTKLPHPPKRIAKAMEEAKVHIDPMKTVEEQIAPTVKAILTKIPIR
IEKVQVAVKIPGTYAGKGYSTITQYGKLIKEEWENDGSWIGIVEIPGGLQDEFYTALSGLTHGEVETKLIK

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=170, Percent_Identity=23.5294117647059, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25144459, Length=222, Percent_Identity=26.1261261261261, Blast_Score=91, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6323050, Length=188, Percent_Identity=26.5957446808511, Blast_Score=85, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24659572, Length=208, Percent_Identity=22.5961538461538, Blast_Score=90, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 25889; Mature: 25889

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNVDDAVIARLERYGERFEILVDAELAADYKRGEDIDISKVIAVEEVFKDAHKADKASE
CCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHH
EAMEKAFETTDALEVADKIIHKGQIQITANQKRKMQEEKTKQVINQIAREAINPQTKLPH
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PPKRIAKAMEEAKVHIDPMKTVEEQIAPTVKAILTKIPIRIEKVQVAVKIPGTYAGKGYS
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHH
TITQYGKLIKEEWENDGSWIGIVEIPGGLQDEFYTALSGLTHGEVETKLIK
HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHCC
>Mature Secondary Structure
MVNVDDAVIARLERYGERFEILVDAELAADYKRGEDIDISKVIAVEEVFKDAHKADKASE
CCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHH
EAMEKAFETTDALEVADKIIHKGQIQITANQKRKMQEEKTKQVINQIAREAINPQTKLPH
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PPKRIAKAMEEAKVHIDPMKTVEEQIAPTVKAILTKIPIRIEKVQVAVKIPGTYAGKGYS
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHH
TITQYGKLIKEEWENDGSWIGIVEIPGGLQDEFYTALSGLTHGEVETKLIK
HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]