Click here to switch to the map view.

The map label for this gene is 84490032

Identifier: 84490032

GI number: 84490032

Start: 1412832

End: 1413260

Strand: Direct

Name: 84490032

Synonym: Msp_1244

Alternate gene names: NA

Gene position: 1412832-1413260 (Clockwise)

Preceding gene: 84490031

Following gene: 84490033

Centisome position: 79.94

GC content: 26.57

Gene sequence:

>429_bases
ATGATCCATAATATTTCTTATAGAACATTTGTTTATGGAACAGAGGATGAAGAAAAGGTAACTGATGCTATCAGTTATAT
TTTTCCCAACCTTTTACCTGAAAAAACCATTACTGAAGATCACTTTGGTAATGATATAATAATATTATCTGAGAAAATAA
CTAAAAAACGACATAATCGAGATTTTATAAAGTTTTTTAATGAAAATTTATCTAATTCAGATAAAGAAATTATTAAAAAC
GAGTTAAGTCGTAGAATGGATGAAAAAGGAAACTTTTTCCTACGTTTTGACAAACAAGAAGCTTATAATAGAAATCTTAA
GTTAACATACTCAGGTAATGCTATACATGCTAGAATAAAAATTGCTAGTTATCCAGTAAGTAAAGAGAATGCATTGAAAG
TTGCTTATAAACTCTTTGACTTCTTATAA

Upstream 100 bases:

>100_bases
TAAAAAACACACAAGACGTGCTTTCAGAGGTTTAACTTCTGCAGGTAAAAAAGGAAGAGGATTAAATAAAAAAGGTAAAG
GTGCTGAAAAGGTTAGATAA

Downstream 100 bases:

>100_bases
CTATAATATTTTTTTTAAAAAAAATAAAACCCTACTAATAAAATTTACAGGATTAATTATATGACTATTTTTTATGATTT
AAATGTTGCACCAGAAATAG

Product: exosome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MIHNISYRTFVYGTEDEEKVTDAISYIFPNLLPEKTITEDHFGNDIIILSEKITKKRHNRDFIKFFNENLSNSDKEIIKN
ELSRRMDEKGNFFLRFDKQEAYNRNLKLTYSGNAIHARIKIASYPVSKENALKVAYKLFDFL

Sequences:

>Translated_142_residues
MIHNISYRTFVYGTEDEEKVTDAISYIFPNLLPEKTITEDHFGNDIIILSEKITKKRHNRDFIKFFNENLSNSDKEIIKN
ELSRRMDEKGNFFLRFDKQEAYNRNLKLTYSGNAIHARIKIASYPVSKENALKVAYKLFDFL
>Mature_142_residues
MIHNISYRTFVYGTEDEEKVTDAISYIFPNLLPEKTITEDHFGNDIIILSEKITKKRHNRDFIKFFNENLSNSDKEIIKN
ELSRRMDEKGNFFLRFDKQEAYNRNLKLTYSGNAIHARIKIASYPVSKENALKVAYKLFDFL

Specific function: Unknown

COG id: COG1325

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16806; Mature: 16806

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHNISYRTFVYGTEDEEKVTDAISYIFPNLLPEKTITEDHFGNDIIILSEKITKKRHNR
CCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHCCH
DFIKFFNENLSNSDKEIIKNELSRRMDEKGNFFLRFDKQEAYNRNLKLTYSGNAIHARIK
HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCEEEEECCCEEEEEEE
IASYPVSKENALKVAYKLFDFL
EEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MIHNISYRTFVYGTEDEEKVTDAISYIFPNLLPEKTITEDHFGNDIIILSEKITKKRHNR
CCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHCCH
DFIKFFNENLSNSDKEIIKNELSRRMDEKGNFFLRFDKQEAYNRNLKLTYSGNAIHARIK
HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCEEEEECCCEEEEEEE
IASYPVSKENALKVAYKLFDFL
EEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA