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The map label for this gene is ybfI [H]

Identifier: 83721629

GI number: 83721629

Start: 2696303

End: 2697094

Strand: Direct

Name: ybfI [H]

Synonym: BTH_I2371

Alternate gene names: 83721629

Gene position: 2696303-2697094 (Clockwise)

Preceding gene: 83719270

Following gene: 83719299

Centisome position: 70.78

GC content: 70.96

Gene sequence:

>792_bases
ATGCACCGTGTCACCCATTACCGCCGCATCGGCGACGGCATCGAAGCGATCAGCCTCGATACCGATCGCGCGTTTCCTCG
TCACGCGCACGACGAGTTCGGCGTCGGGGTGATCGTCAGCGGCGCGCATCGCTCGTGGAGCGGGCGCGGAACGGTTGACG
CGCGCGCGGGCGACGCGATCATGGTCAATCCGGGCGAAGTCCACGACGGCATGCCGCTCGGTGCGCGCGCCACGCGCAGC
TGGCGCATGCTCTATCTCGCGCCCGCGCTCGTGGCGGGCTTCGCCGAGGAGGAAGGACTCGGCCGCATCGAGCTCGTCAG
TCCGGTCGTGCGCGATGTGCGGCTCGCGGCTGCCGTCGGGCGGCTGTTCTCGCATGTCGTGGCGGGCGACAAAACGTCCG
TGGCGCAAGACGAGGCGCTCGCGCAGCTCGTCGCCGCGCTGCTCGCCCGGCATGTGAACGGGCGCGCGCCGCGCGACGAA
AGCGCGCCCGCGATCCGGGCCGCGCGCGAGCGGCTCGATGCGTCGCCCGCCGATGCCGTATCGCTTGCCGAACTCGCGAA
TCTGGCGGGCGTCAGCCGTTTTCAACTGCTGCGTGGCTTCGCGCGCGAGCTCGGCATCACGCCGCATGCCTATCTGATCC
AGTCGCGCACGCGCTTAGCCCGCACGTTGCTCGCGCGCGGCCTGTCGATCGCCGATGCCGCCGCCGAAGCGGGCTTCGCC
GATCAGAGCCATCTGACCCGTGCGTTCACCCGCCAGTTCGGCATCACGCCCGGGCGCTTCTCGCCGCGCTGA

Upstream 100 bases:

>100_bases
CGCGCTTGCGGCCGAGCGAGCCGATGCCGGCGGTCGTCTGCTTGCCGCTTCCGGCGCATAATGGCGTCGCGGCCGACCGA
CGGCCGTCCGAGGAGCGCAC

Downstream 100 bases:

>100_bases
GCGCATGCTGCGCGGCGACGTCGCGCGCATCGCGTGATCCGATATCCCGACCGATCGTCCGCCGCGCAGCCAGCGCTCCC
CGCCGCCCGCCGGCTGCAAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MHRVTHYRRIGDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGRGTVDARAGDAIMVNPGEVHDGMPLGARATRS
WRMLYLAPALVAGFAEEEGLGRIELVSPVVRDVRLAAAVGRLFSHVVAGDKTSVAQDEALAQLVAALLARHVNGRAPRDE
SAPAIRAARERLDASPADAVSLAELANLAGVSRFQLLRGFARELGITPHAYLIQSRTRLARTLLARGLSIADAAAEAGFA
DQSHLTRAFTRQFGITPGRFSPR

Sequences:

>Translated_263_residues
MHRVTHYRRIGDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGRGTVDARAGDAIMVNPGEVHDGMPLGARATRS
WRMLYLAPALVAGFAEEEGLGRIELVSPVVRDVRLAAAVGRLFSHVVAGDKTSVAQDEALAQLVAALLARHVNGRAPRDE
SAPAIRAARERLDASPADAVSLAELANLAGVSRFQLLRGFARELGITPHAYLIQSRTRLARTLLARGLSIADAAAEAGFA
DQSHLTRAFTRQFGITPGRFSPR
>Mature_263_residues
MHRVTHYRRIGDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGRGTVDARAGDAIMVNPGEVHDGMPLGARATRS
WRMLYLAPALVAGFAEEEGLGRIELVSPVVRDVRLAAAVGRLFSHVVAGDKTSVAQDEALAQLVAALLARHVNGRAPRDE
SAPAIRAARERLDASPADAVSLAELANLAGVSRFQLLRGFARELGITPHAYLIQSRTRLARTLLARGLSIADAAAEAGFA
DQSHLTRAFTRQFGITPGRFSPR

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28201; Mature: 28201

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRVTHYRRIGDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGRGTVDARAGDAI
CCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCEE
MVNPGEVHDGMPLGARATRSWRMLYLAPALVAGFAEEEGLGRIELVSPVVRDVRLAAAVG
EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RLFSHVVAGDKTSVAQDEALAQLVAALLARHVNGRAPRDESAPAIRAARERLDASPADAV
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHH
SLAELANLAGVSRFQLLRGFARELGITPHAYLIQSRTRLARTLLARGLSIADAAAEAGFA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
DQSHLTRAFTRQFGITPGRFSPR
CHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MHRVTHYRRIGDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGRGTVDARAGDAI
CCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCEE
MVNPGEVHDGMPLGARATRSWRMLYLAPALVAGFAEEEGLGRIELVSPVVRDVRLAAAVG
EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RLFSHVVAGDKTSVAQDEALAQLVAALLARHVNGRAPRDESAPAIRAARERLDASPADAV
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHH
SLAELANLAGVSRFQLLRGFARELGITPHAYLIQSRTRLARTLLARGLSIADAAAEAGFA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
DQSHLTRAFTRQFGITPGRFSPR
CHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]